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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:9.6 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:117.7 nTPM
Mouse:47.4 nTPM
Allen mouse:10.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.0
2290 Female, age 72, unknown 10.3
2289 Male, age 61, right hemisphere 9.4
1857 Female, age 85, left hemisphere 7.0
1781 Male, age 74, unknown 6.9
2846 Female, age 79, unknown 6.5
1854 Male, age 80, left hemisphere 4.9
2288 Male, age 75, left hemisphere 3.4
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 6.6
2568 Male, age 61, both hemispheres 9.1
2284 Female, age 91, both hemispheres 8.6
2491 Male, age 75, both hemispheres 7.7
2645 Female, age 72, unknown 7.2
2392 Female, age 94, both hemispheres 6.6
2292 Female, age 85, both hemispheres 6.3
2198 Male, age 80, both hemispheres 5.9
1956 Male, age 74, unknown 5.3
2196 Female, age 79, unknown 2.9
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.9
2824 Male, age 61, right hemisphere 15.2
1856 Female, age 91, right hemisphere 9.4
1783 Male, age 74, unknown 7.9
2698 Female, age 72, unknown 5.6
1806 Female, age 85, left hemisphere 4.7
2732 Male, age 80, right hemisphere 2.8
2286 Male, age 75, left hemisphere 1.3
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.6
2484 Female, age 94, left hemisphere 3.6
2393 Male, age 80, right hemisphere 3.1
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 12.7
2195 Female, age 85, both hemispheres 22.3
2775 Male, age 80, right hemisphere 15.1
2029 Male, age 61, right hemisphere 14.5
1812 Female, age 91, both hemispheres 6.6
1979 Male, age 74, unknown 4.9
Olfactory tubercle
nTPM: 11.5
2487 Female, age 94, left hemisphere 17.7
1998 Female, age 91, both hemispheres 10.7
2856 Male, age 75, right hemisphere 9.1
1846 Male, age 80, right hemisphere 8.7
Putamen
nTPM: 4.9
2466 Female, age 79, unknown 8.7
1838 Male, age 80, right hemisphere 8.6
1829 Male, age 74, unknown 8.0
1937 Female, age 91, right hemisphere 5.5
2489 Female, age 72, unknown 3.7
2482 Female, age 94, left hemisphere 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 10.3
1960 Male, age 74, unknown 18.4
2629 Female, age 94, right hemisphere 15.6
2031 Female, age 72, unknown 14.0
2059 Female, age 85, both hemispheres 13.0
2009 Female, age 91, both hemispheres 9.3
2394 Male, age 61, left hemisphere 2.2
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 27.3
Min nTPM: 0.6
Std nTPM: 4.2
Median nTPM: 6.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 23.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 20.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 18.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 17.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 17.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 16.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 16.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 15.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 15.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 15.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 30.6
Min nTPM: 0.1
Std nTPM: 5.3
Median nTPM: 9.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 30.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 24.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 21.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 20.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 20.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 20.1
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 19.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 19.5
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 19.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 19.2
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 18.8
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Brain - Putamen (basal ganglia)
Average nTPM: 5.8
Samples: 205

Max nTPM: 20.7
Min nTPM: 0.5
Std nTPM: 3.6
Median nTPM: 5.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 20.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 15.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 15.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 14.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 14.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 13.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 12.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 12.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 12.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 12.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.0
FF:10164-103B2 76 years, female 75.0
Globus pallidus
Scaled Tags Per Million: 16.0
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 14.8
Nucleus accumbens
Scaled Tags Per Million: 67.3
FF:10037-101F1 23-56 years, mixed 67.3
Putamen
Scaled Tags Per Million: 82.2
FF:10176-103C5 60 years, female 82.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 117.7
Pig sample Sample description nTPM
Caudate
nTPM: 117.7
Samples: 4

Max nTPM: 129.7
Min nTPM: 89.9
Sample A Female 121.7
Sample B Female 129.5
Sample C Male 129.7
Sample D Male 89.9
Putamen
nTPM: 105.2
Samples: 4

Max nTPM: 117.9
Min nTPM: 94.0
Sample A Female 94.0
Sample B Female 114.5
Sample C Male 94.3
Sample D Male 117.9
Septum
nTPM: 72.5
Samples: 4

Max nTPM: 137.3
Min nTPM: 21.0
Sample A Female 137.3
Sample B Female 102.2
Sample C Male 29.4
Sample D Male 21.0
Ventral pallidum
nTPM: 90.6
Samples: 4

Max nTPM: 145.3
Min nTPM: 39.3
Sample A Female 145.3
Sample B Female 90.6
Sample C Male 39.3
Sample D Male 87.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 47.4
Samples: 4

Max nTPM: 48.9
Min nTPM: 45.5
Sample A Male 47.9
Sample B Male 45.5
Sample C Female 47.3
Sample D Female 48.9
Septum
nTPM: 21.6
Samples: 4

Max nTPM: 30.0
Min nTPM: 15.7
Sample A Male 30.0
Sample B Male 15.7
Sample C Female 20.4
Sample D Female 20.3
Ventral forebrain
nTPM: 39.2
Samples: 4

Max nTPM: 40.8
Min nTPM: 36.0
Sample A Male 36.0
Sample B Male 39.1
Sample C Female 40.7
Sample D Female 40.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.4
71809079 Antisense, RP_051005_01_E07, Mouse strain C57BL/6J (56 days, male) 10.4
74363334 Antisense, RP_051005_01_E07, Mouse strain C57BL/6J (56 days, male) 5.5
Pallidum
Expression energy: 6.9
71809079 Antisense, RP_051005_01_E07, Mouse strain C57BL/6J (56 days, male) 6.9
74363334 Antisense, RP_051005_01_E07, Mouse strain C57BL/6J (56 days, male) 2.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.