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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:19.5 nTPM
HPA:19.5 nTPM
GTEx:21.6 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Mouse:35.7 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA066070
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Hippocampus
nTPM: 19.5
2621 Female, age 67, right hemisphere 21.9
1898 Male, age 80, left hemisphere 21.2
2148 Female, age 91, left hemisphere 20.5
1855 Male, age 76, left hemisphere 18.2
2529 Female, age 94, left hemisphere 18.2
1911 Female, age 85, right hemisphere 17.3
Dentate gyrus
nTPM: 19.5
2531 Female, age 67, both hemispheres 23.0
2530 Female, age 94, left hemisphere 22.1
2010 Male, age 76, both hemispheres 19.3
1927 Female, age 91, both hemispheres 19.2
2528 Male, age 74, both hemispheres 17.4
2246 Female, age 85, both hemispheres 16.3
Entorhinal gyrus
nTPM: 16.8
2613 Female, age 94, left hemisphere 19.3
2764 Male, age 80, right hemisphere 18.8
1787 Male, age 76, left hemisphere 17.5
2686 Male, age 75, right hemisphere 15.6
2117 Female, age 91, right hemisphere 15.0
1938 Female, age 85, left hemisphere 14.8
Hippocampus, CA1
nTPM: 17.5
2749 Male, age 80, left hemisphere 22.1
2527 Male, age 74, both hemispheres 19.0
1873 Female, age 85, both hemispheres 16.9
2045 Male, age 76, both hemispheres 15.5
2082 Female, age 91, right hemisphere 14.0
Hippocampus, CA2
nTPM: 18.1
1963 Male, age 80, left hemisphere 23.3
2437 Female, age 94, left hemisphere 18.8
1892 Male, age 76, both hemispheres 18.1
1940 Female, age 85, left hemisphere 16.5
2249 Male, age 74, both hemispheres 16.3
2113 Female, age 91, right hemisphere 15.5
Hippocampus, CA3
nTPM: 19.2
2861 Female, age 67, both hemispheres 30.5
2620 Female, age 94, left hemisphere 23.1
2137 Male, age 80, left hemisphere 18.6
1867 Male, age 76, both hemispheres 15.6
1891 Female, age 85, both hemispheres 14.1
2436 Male, age 74, both hemispheres 13.2
Parahippocampal cortex
nTPM: 16.7
2622 Female, age 67, right hemisphere 21.6
2245 Female, age 91, both hemispheres 20.1
2532 Female, age 72, left hemisphere 18.4
1990 Female, age 91, right hemisphere 16.2
1933 Female, age 85, both hemispheres 15.9
2692 Male, age 74, both hemispheres 15.7
2250 Female, age 67, right hemisphere 15.6
2018 Male, age 76, both hemispheres 14.9
1850 Male, age 80, both hemispheres 14.3
2693 Female, age 94, both hemispheres 13.7
Perirhinal gyrus
nTPM: 16.7
1794 Male, age 80, right hemisphere 18.5
2521 Female, age 94, right hemisphere 17.3
1847 Female, age 91, left hemisphere 16.5
2848 Male, age 76, right hemisphere 16.0
1841 Female, age 85, right hemisphere 15.2
Subiculum
nTPM: 15.4
2619 Male, age 74, both hemispheres 17.3
1977 Female, age 85, both hemispheres 16.6
2729 Female, age 91, right hemisphere 16.5
1901 Male, age 80, both hemispheres 14.9
2438 Female, age 94, left hemisphere 13.7
2042 Male, age 76, both hemispheres 13.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.6
Samples: 197

Max nTPM: 44.8
Min nTPM: 6.8
Std nTPM: 7.9
Median nTPM: 20.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 44.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 44.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 39.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 39.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 38.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 38.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 36.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 36.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 35.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 35.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.2
FF:10169-103B7 60 years, female 28.2
FF:10153-102I9 76 years, female 24.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 38.4
Min nTPM: 34.1
Sample A Male 38.4
Sample B Male 34.1
Sample C Female 34.8
Sample D Female 35.7
Hippocampal formation
nTPM: 35.6
Samples: 4

Max nTPM: 38.9
Min nTPM: 33.7
Sample A Male 33.7
Sample B Male 34.9
Sample C Female 38.9
Sample D Female 34.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
70596035 Antisense, RP_050628_03_H08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.