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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.2 nTPM
HPA:0.2 nTPM
GTEx:0.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA052619
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2846 Female, age 79, unknown 0.3
1781 Male, age 74, unknown 0.2
1854 Male, age 80, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.2
2288 Male, age 75, left hemisphere 0.2
2289 Male, age 61, right hemisphere 0.2
2481 Female, age 94, left hemisphere 0.2
2290 Female, age 72, unknown 0.1
Claustrum
nTPM: 0.2
2198 Male, age 80, both hemispheres 0.3
2568 Male, age 61, both hemispheres 0.3
2196 Female, age 79, unknown 0.2
2284 Female, age 91, both hemispheres 0.2
2292 Female, age 85, both hemispheres 0.2
2392 Female, age 94, both hemispheres 0.2
2645 Female, age 72, unknown 0.2
1956 Male, age 74, unknown 0.1
2491 Male, age 75, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.2
2567 Female, age 72, unknown 0.3
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.2
2646 Male, age 61, right hemisphere 0.2
2772 Female, age 79, unknown 0.2
Globus pallidus, internus
nTPM: 0.2
1818 Male, age 74, unknown 0.3
2566 Female, age 72, unknown 0.3
2111 Female, age 85, right hemisphere 0.2
2287 Male, age 75, right hemisphere 0.2
2483 Female, age 94, right hemisphere 0.2
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.2
2824 Male, age 61, right hemisphere 0.4
1783 Male, age 74, unknown 0.2
1856 Female, age 91, right hemisphere 0.2
2286 Male, age 75, left hemisphere 0.2
2391 Female, age 94, left hemisphere 0.2
2732 Male, age 80, right hemisphere 0.2
1806 Female, age 85, left hemisphere 0.1
2698 Female, age 72, unknown 0.1
Nucleus basalis of Meynert
nTPM: 0.2
2393 Male, age 80, right hemisphere 0.2
2484 Female, age 94, left hemisphere 0.2
2569 Male, age 61, both hemispheres 0.2
2821 Male, age 75, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.2
1812 Female, age 91, both hemispheres 0.2
1979 Male, age 74, unknown 0.2
2029 Male, age 61, right hemisphere 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.2
2487 Female, age 94, left hemisphere 0.3
1846 Male, age 80, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.2
2856 Male, age 75, right hemisphere 0.2
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.2
2482 Female, age 94, left hemisphere 0.2
2489 Female, age 72, unknown 0.2
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
1937 Female, age 91, right hemisphere 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.2
2059 Female, age 85, both hemispheres 0.3
2199 Male, age 80, right hemisphere 0.3
2394 Male, age 61, left hemisphere 0.3
1960 Male, age 74, unknown 0.2
2009 Female, age 91, both hemispheres 0.2
2629 Female, age 94, right hemisphere 0.2
2031 Female, age 72, unknown 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 0.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 0.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 0.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 0.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 0.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 0.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 0.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 0.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 0.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 0.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 2.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 2.2
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 1.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 1.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 1.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 1.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 1.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 0.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 0.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 0.6
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 0.6
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 0.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 0.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 0.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 0.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 0.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 0.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 0.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 0.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 0.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 0.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 0.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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