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PCDHGC5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:28.4 nTPM
HPA:28.4 nTPM
GTEx:5.9 nTPM
FANTOM5:54.6 Scaled Tags Per Million
Mouse:103.3 nTPM
Allen mouse:12.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008755Antibody HPA076140
Glial cells MediumMedium
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.9
1855 Male, age 76, left hemisphere 21.5
1898 Male, age 80, left hemisphere 20.8
1911 Female, age 85, right hemisphere 15.7
2148 Female, age 91, left hemisphere 9.1
2621 Female, age 67, right hemisphere 7.7
2529 Female, age 94, left hemisphere 2.4
Dentate gyrus
nTPM: 12.5
1927 Female, age 91, both hemispheres 25.4
2010 Male, age 76, both hemispheres 18.2
2246 Female, age 85, both hemispheres 13.1
2531 Female, age 67, both hemispheres 12.0
2530 Female, age 94, left hemisphere 4.7
2528 Male, age 74, both hemispheres 1.3
Entorhinal gyrus
nTPM: 4.8
2764 Male, age 80, right hemisphere 9.7
1938 Female, age 85, left hemisphere 7.2
2613 Female, age 94, left hemisphere 6.8
1787 Male, age 76, left hemisphere 5.4
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 28.4
2749 Male, age 80, left hemisphere 82.9
2045 Male, age 76, both hemispheres 28.0
1873 Female, age 85, both hemispheres 17.2
2082 Female, age 91, right hemisphere 8.5
2527 Male, age 74, both hemispheres 5.5
Hippocampus, CA2
nTPM: 9.8
1892 Male, age 76, both hemispheres 26.7
1963 Male, age 80, left hemisphere 17.2
2113 Female, age 91, right hemisphere 6.1
1940 Female, age 85, left hemisphere 4.2
2249 Male, age 74, both hemispheres 3.5
2437 Female, age 94, left hemisphere 1.4
Hippocampus, CA3
nTPM: 26.6
2137 Male, age 80, left hemisphere 81.2
1867 Male, age 76, both hemispheres 35.6
2620 Female, age 94, left hemisphere 23.5
2861 Female, age 67, both hemispheres 10.0
1891 Female, age 85, both hemispheres 5.5
2436 Male, age 74, both hemispheres 3.7
Parahippocampal cortex
nTPM: 7.0
2018 Male, age 76, both hemispheres 17.8
2245 Female, age 91, both hemispheres 17.2
1850 Male, age 80, both hemispheres 10.2
1933 Female, age 85, both hemispheres 8.1
2250 Female, age 67, right hemisphere 5.2
2693 Female, age 94, both hemispheres 4.5
2532 Female, age 72, left hemisphere 3.7
1990 Female, age 91, right hemisphere 2.8
2622 Female, age 67, right hemisphere 0.6
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 12.5
1847 Female, age 91, left hemisphere 19.7
2521 Female, age 94, right hemisphere 17.0
1794 Male, age 80, right hemisphere 12.9
1841 Female, age 85, right hemisphere 7.7
2848 Male, age 76, right hemisphere 5.3
Subiculum
nTPM: 9.4
1901 Male, age 80, both hemispheres 28.2
2042 Male, age 76, both hemispheres 18.0
1977 Female, age 85, both hemispheres 6.5
2729 Female, age 91, right hemisphere 3.6
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.9
Samples: 197

Max nTPM: 41.8
Min nTPM: 0.2
Std nTPM: 7.0
Median nTPM: 3.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 41.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 39.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 26.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 25.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 24.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 22.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 22.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 21.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 19.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.6
FF:10169-103B7 60 years, female 83.7
FF:10153-102I9 76 years, female 25.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 103.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 103.3
Samples: 4

Max nTPM: 116.3
Min nTPM: 90.7
Sample A Male 104.2
Sample B Male 102.1
Sample C Female 90.7
Sample D Female 116.3
Hippocampal formation
nTPM: 94.1
Samples: 4

Max nTPM: 103.3
Min nTPM: 85.5
Sample A Male 85.5
Sample B Male 103.3
Sample C Female 95.0
Sample D Female 92.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.1
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 19.6
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 11.6
70784964 Antisense, RP_050706_01_E10, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.