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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:21.0 nTPM
FANTOM5:119.9 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:30.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2019 Male, age 18, unknown 26.5
2586 Male, age 75, left hemisphere 24.0
2666 Male, age 74, left hemisphere 23.3
1870 Female, age 42, unknown 22.8
1830 Male, age 51, unknown 22.4
2411 Female, age 72, unknown 21.4
2828 Female, age 72, unknown 21.0
1833 Male, age 53, unknown 20.1
2219 Male, age 76, both hemispheres 19.8
1827 Male, age 72, unknown 18.2
Dorsal raphe nucleus
nTPM: 19.5
2750 Male, age 76, both hemispheres 21.8
1828 Male, age 53, unknown 21.4
2047 Male, age 72, unknown 19.4
2016 Female, age 72, unknown 18.2
2298 Female, age 72, unknown 16.6
Inferior colliculus
nTPM: 18.1
1890 Male, age 53, unknown 19.9
2849 Male, age 72, unknown 17.9
1848 Female, age 42, unknown 17.3
2097 Female, age 72, unknown 17.3
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Pedunculopontine tegmental nucleus
nTPM: 20.3
2334 Male, age 80, both hemispheres 21.1
2338 Male, age 61, both hemispheres 20.5
1921 Female, age 85, both hemispheres 19.3
Periaquaductal grey, anterior
nTPM: 19.1
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 19.6
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 16.8
2464 Female, age 72, unknown 18.2
2850 Male, age 76, both hemispheres 17.1
1831 Male, age 72, unknown 16.5
1840 Male, age 53, unknown 15.3
Periaquaductal grey, lateral
nTPM: 17.3
2053 Male, age 18, unknown 17.6
2272 Male, age 74, both hemispheres 17.4
2140 Male, age 76, both hemispheres 16.9
Pretectal area
nTPM: 19.2
1815 Male, age 53, unknown 21.7
2407 Male, age 75, both hemispheres 21.7
1817 Female, age 42, unknown 21.4
2007 Male, age 72, unknown 20.4
2316 Male, age 76, right hemisphere 20.1
2667 Female, age 75, unknown 19.3
1944 Female, age 72, unknown 18.9
1816 Male, age 51, unknown 17.8
2273 Male, age 74, both hemispheres 17.2
2825 Male, age 18, unknown 17.2
2224 Female, age 72, unknown 15.5
Red nucleus
nTPM: 24.4
1865 Male, age 51, unknown 27.1
2227 Male, age 72, unknown 26.0
2588 Male, age 74, left hemisphere 25.8
2785 Male, age 18, unknown 25.8
2769 Male, age 72, unknown 25.4
1904 Male, age 53, unknown 24.8
1954 Female, age 42, unknown 24.1
2584 Male, age 75, left hemisphere 24.1
1821 Female, age 72, unknown 23.6
2823 Male, age 76, right hemisphere 23.4
2503 Female, age 72, unknown 22.3
2725 Female, age 75, unknown 20.9
Substantia nigra
nTPM: 21.3
2583 Male, age 75, right hemisphere 23.2
1916 Female, age 42, unknown 22.5
2241 Male, age 72, unknown 22.5
2409 Female, age 72, unknown 21.8
2590 Female, age 75, unknown 21.7
1851 Male, age 51, unknown 21.4
1889 Female, age 72, unknown 20.5
1941 Male, age 53, unknown 20.5
2665 Male, age 74, both hemispheres 19.6
2699 Male, age 18, unknown 19.1
Superior colliculus
nTPM: 19.9
1913 Female, age 42, unknown 21.6
2668 Female, age 75, unknown 21.3
2587 Male, age 74, left hemisphere 20.9
2664 Male, age 75, both hemispheres 20.2
1839 Male, age 51, unknown 19.9
1995 Male, age 72, unknown 19.5
1796 Male, age 53, unknown 19.0
1895 Male, age 76, right hemisphere 18.9
2087 Female, age 72, unknown 18.8
2261 Male, age 18, unknown 18.8
Ventral tegmental area
nTPM: 20.9
2223 Female, age 72, unknown 23.4
2410 Female, age 72, unknown 21.3
1942 Male, age 51, unknown 20.9
1915 Female, age 42, unknown 20.3
2218 Male, age 76, both hemispheres 20.2
2021 Male, age 53, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.0
Samples: 139

Max nTPM: 58.2
Min nTPM: 7.7
Std nTPM: 9.5
Median nTPM: 19.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 54.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 44.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 43.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 42.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 40.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 39.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.9
FF:10158-103A5 76 years, female 119.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 78.9
Min nTPM: 20.7
Sample A Female 78.9
Sample B Female 28.8
Sample C Male 25.0
Sample D Male 20.7
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 25.8
Min nTPM: 20.8
Sample B Female 25.8
Sample C Male 20.8
Sample D Male 23.3
Substantia nigra
nTPM: 34.5
Samples: 4

Max nTPM: 43.7
Min nTPM: 27.3
Sample A Female 37.4
Sample B Female 27.3
Sample C Male 29.5
Sample D Male 43.7
Superior colliculi
nTPM: 28.4
Samples: 4

Max nTPM: 32.8
Min nTPM: 19.7
Sample A Female 29.2
Sample B Female 19.7
Sample C Male 31.9
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 36.1
Min nTPM: 27.8
Sample A Male 28.7
Sample B Male 27.8
Sample C Female 30.7
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69735986 Antisense, RP_050503_03_H08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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