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ARPC4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.2 nTPM
HPA:136.2 nTPM
GTEx:82.9 nTPM
FANTOM5:77.8 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:262.9 nTPM
Allen mouse:11.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 136.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 132.4
2290 Female, age 72, unknown 138.7
1857 Female, age 85, left hemisphere 136.3
2846 Female, age 79, unknown 136.3
2481 Female, age 94, left hemisphere 133.5
1781 Male, age 74, unknown 133.2
2288 Male, age 75, left hemisphere 130.0
1854 Male, age 80, left hemisphere 129.6
2289 Male, age 61, right hemisphere 121.3
Claustrum
nTPM: 134.0
2645 Female, age 72, unknown 141.0
2198 Male, age 80, both hemispheres 136.5
2292 Female, age 85, both hemispheres 134.9
2284 Female, age 91, both hemispheres 134.1
2491 Male, age 75, both hemispheres 133.8
1956 Male, age 74, unknown 133.7
2196 Female, age 79, unknown 131.3
2568 Male, age 61, both hemispheres 130.8
2392 Female, age 94, both hemispheres 130.0
Globus pallidus, externus
nTPM: 131.1
2395 Male, age 75, both hemispheres 140.4
1996 Male, age 80, right hemisphere 132.0
2772 Female, age 79, unknown 131.3
2567 Female, age 72, unknown 126.4
2646 Male, age 61, right hemisphere 125.8
Globus pallidus, internus
nTPM: 130.9
2483 Female, age 94, right hemisphere 139.2
2287 Male, age 75, right hemisphere 134.4
2778 Female, age 91, both hemispheres 131.2
2566 Female, age 72, unknown 128.9
1818 Male, age 74, unknown 128.2
2037 Male, age 80, right hemisphere 127.7
2111 Female, age 85, right hemisphere 127.1
Nucleus accumbens
nTPM: 131.1
1806 Female, age 85, left hemisphere 137.9
1783 Male, age 74, unknown 136.3
1856 Female, age 91, right hemisphere 131.8
2391 Female, age 94, left hemisphere 130.2
2698 Female, age 72, unknown 129.2
2286 Male, age 75, left hemisphere 129.1
2824 Male, age 61, right hemisphere 128.6
2732 Male, age 80, right hemisphere 126.0
Nucleus basalis of Meynert
nTPM: 128.9
2484 Female, age 94, left hemisphere 131.6
2569 Male, age 61, both hemispheres 128.3
2821 Male, age 75, both hemispheres 128.0
2393 Male, age 80, right hemisphere 127.8
Nucleus of the diagonal band
nTPM: 136.2
1812 Female, age 91, both hemispheres 142.8
2775 Male, age 80, right hemisphere 140.2
2195 Female, age 85, both hemispheres 137.4
2029 Male, age 61, right hemisphere 131.3
1979 Male, age 74, unknown 129.5
Olfactory tubercle
nTPM: 131.8
1998 Female, age 91, both hemispheres 136.2
1846 Male, age 80, right hemisphere 134.4
2487 Female, age 94, left hemisphere 130.5
2856 Male, age 75, right hemisphere 126.0
Putamen
nTPM: 131.4
2466 Female, age 79, unknown 136.8
2647 Male, age 75, left hemisphere 132.7
2482 Female, age 94, left hemisphere 132.3
1829 Male, age 74, unknown 130.6
1838 Male, age 80, right hemisphere 129.4
1937 Female, age 91, right hemisphere 129.2
2489 Female, age 72, unknown 128.6
Septal nuclei
nTPM: 133.4
1960 Male, age 74, unknown 149.7
2031 Female, age 72, unknown 141.0
2059 Female, age 85, both hemispheres 134.0
2009 Female, age 91, both hemispheres 131.7
2394 Male, age 61, left hemisphere 128.1
2629 Female, age 94, right hemisphere 125.7
2199 Male, age 80, right hemisphere 123.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 82.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.2
Samples: 246

Max nTPM: 140.8
Min nTPM: 42.3
Std nTPM: 18.1
Median nTPM: 71.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 140.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 133.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 130.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 126.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 115.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 114.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 114.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 113.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 113.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 111.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 110.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 82.9
Samples: 246

Max nTPM: 165.9
Min nTPM: 45.1
Std nTPM: 17.9
Median nTPM: 82.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 165.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 139.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 130.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 122.6
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 119.7
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 118.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 117.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 116.6
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 116.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 115.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 115.2
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Brain - Putamen (basal ganglia)
Average nTPM: 75.0
Samples: 205

Max nTPM: 126.2
Min nTPM: 46.4
Std nTPM: 16.1
Median nTPM: 73.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 126.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 120.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 120.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 119.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 115.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 114.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 113.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 112.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 112.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 111.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 111.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.0
FF:10164-103B2 76 years, female 63.0
Globus pallidus
Scaled Tags Per Million: 74.2
FF:10175-103C4 60 years, female 87.6
FF:10161-103A8 76 years, female 60.8
Nucleus accumbens
Scaled Tags Per Million: 77.8
FF:10037-101F1 23-56 years, mixed 77.8
Putamen
Scaled Tags Per Million: 62.0
FF:10176-103C5 60 years, female 62.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 73.0
Pig sample Sample description nTPM
Caudate
nTPM: 63.9
Samples: 4

Max nTPM: 72.9
Min nTPM: 56.2
Sample A Female 56.2
Sample B Female 70.3
Sample C Male 72.9
Sample D Male 56.2
Putamen
nTPM: 73.0
Samples: 4

Max nTPM: 97.9
Min nTPM: 60.7
Sample A Female 60.7
Sample B Female 68.3
Sample C Male 97.9
Sample D Male 64.9
Septum
nTPM: 60.9
Samples: 4

Max nTPM: 65.7
Min nTPM: 56.5
Sample A Female 65.7
Sample B Female 59.8
Sample C Male 56.5
Sample D Male 61.6
Ventral pallidum
nTPM: 57.4
Samples: 4

Max nTPM: 67.3
Min nTPM: 50.6
Sample A Female 55.9
Sample B Female 67.3
Sample C Male 55.7
Sample D Male 50.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 262.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 224.0
Samples: 4

Max nTPM: 251.2
Min nTPM: 208.0
Sample A Male 212.7
Sample B Male 208.0
Sample C Female 223.9
Sample D Female 251.2
Septum
nTPM: 262.9
Samples: 4

Max nTPM: 302.0
Min nTPM: 234.3
Sample A Male 241.9
Sample B Male 302.0
Sample C Female 273.2
Sample D Female 234.3
Ventral forebrain
nTPM: 226.3
Samples: 4

Max nTPM: 270.6
Min nTPM: 196.0
Sample A Male 218.4
Sample B Male 196.0
Sample C Female 270.6
Sample D Female 220.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.8
69013768 Antisense, RP_050309_02_H12, Mouse strain C57BL/6J (56 days, male) 11.8
Pallidum
Expression energy: 8.0
69013768 Antisense, RP_050309_02_H12, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.