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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:137.2 nTPM
HPA:137.2 nTPM
GTEx:68.7 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:171.2 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.6
2586 Male, age 75, left hemisphere 151.1
2666 Male, age 74, left hemisphere 141.5
1827 Male, age 72, unknown 138.7
2411 Female, age 72, unknown 135.7
2019 Male, age 18, unknown 134.9
2828 Female, age 72, unknown 134.3
1833 Male, age 53, unknown 128.7
1870 Female, age 42, unknown 128.7
1830 Male, age 51, unknown 127.6
2219 Male, age 76, both hemispheres 125.2
Dorsal raphe nucleus
nTPM: 128.8
2750 Male, age 76, both hemispheres 131.5
2298 Female, age 72, unknown 131.0
2047 Male, age 72, unknown 129.6
1828 Male, age 53, unknown 128.6
2016 Female, age 72, unknown 123.3
Inferior colliculus
nTPM: 125.8
2097 Female, age 72, unknown 129.1
1848 Female, age 42, unknown 125.3
2849 Male, age 72, unknown 124.4
1890 Male, age 53, unknown 124.3
Median raphe nucleus
nTPM: 132.4
2220 Male, age 76, midline 132.4
Pedunculopontine tegmental nucleus
nTPM: 131.8
2338 Male, age 61, both hemispheres 136.8
2334 Male, age 80, both hemispheres 133.3
1921 Female, age 85, both hemispheres 125.3
Periaquaductal grey, anterior
nTPM: 133.2
1795 Male, age 51, unknown 136.2
1947 Male, age 18, unknown 131.9
2502 Female, age 75, unknown 131.4
Periaquaductal grey, dorsal
nTPM: 127.2
1831 Male, age 72, unknown 128.9
2464 Female, age 72, unknown 127.8
1840 Male, age 53, unknown 127.3
2850 Male, age 76, both hemispheres 124.9
Periaquaductal grey, lateral
nTPM: 124.1
2053 Male, age 18, unknown 126.8
2140 Male, age 76, both hemispheres 123.7
2272 Male, age 74, both hemispheres 121.6
Pretectal area
nTPM: 134.3
1817 Female, age 42, unknown 146.1
1816 Male, age 51, unknown 144.9
2007 Male, age 72, unknown 142.4
1815 Male, age 53, unknown 142.1
1944 Female, age 72, unknown 140.5
2407 Male, age 75, both hemispheres 131.8
2825 Male, age 18, unknown 128.1
2667 Female, age 75, unknown 127.8
2224 Female, age 72, unknown 126.4
2316 Male, age 76, right hemisphere 124.1
2273 Male, age 74, both hemispheres 122.9
Red nucleus
nTPM: 129.5
2584 Male, age 75, left hemisphere 141.4
2785 Male, age 18, unknown 135.2
2725 Female, age 75, unknown 131.7
1821 Female, age 72, unknown 130.3
2588 Male, age 74, left hemisphere 130.3
2227 Male, age 72, unknown 128.5
1904 Male, age 53, unknown 127.4
1954 Female, age 42, unknown 127.0
2503 Female, age 72, unknown 127.0
2769 Male, age 72, unknown 126.5
1865 Male, age 51, unknown 125.9
2823 Male, age 76, right hemisphere 122.8
Substantia nigra
nTPM: 137.2
1916 Female, age 42, unknown 145.2
2583 Male, age 75, right hemisphere 142.8
1851 Male, age 51, unknown 141.8
2665 Male, age 74, both hemispheres 141.3
1941 Male, age 53, unknown 139.9
1889 Female, age 72, unknown 137.1
2590 Female, age 75, unknown 135.8
2699 Male, age 18, unknown 131.4
2241 Male, age 72, unknown 130.6
2409 Female, age 72, unknown 126.2
Superior colliculus
nTPM: 133.4
2664 Male, age 75, both hemispheres 142.9
2668 Female, age 75, unknown 139.7
2087 Female, age 72, unknown 136.7
2261 Male, age 18, unknown 135.0
1796 Male, age 53, unknown 134.5
2587 Male, age 74, left hemisphere 131.1
1913 Female, age 42, unknown 131.0
1839 Male, age 51, unknown 130.2
1995 Male, age 72, unknown 129.6
1895 Male, age 76, right hemisphere 123.2
Ventral tegmental area
nTPM: 133.9
2410 Female, age 72, unknown 138.8
1915 Female, age 42, unknown 137.0
2218 Male, age 76, both hemispheres 135.2
2021 Male, age 53, unknown 131.1
2223 Female, age 72, unknown 131.0
1942 Male, age 51, unknown 130.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.7
Samples: 139

Max nTPM: 127.6
Min nTPM: 42.3
Std nTPM: 15.0
Median nTPM: 66.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 117.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 111.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 106.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 100.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 100.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 97.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 97.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 94.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.7
Pig sample Sample description nTPM
Midbrain
nTPM: 62.9
Samples: 4

Max nTPM: 84.9
Min nTPM: 48.1
Sample A Female 84.9
Sample B Female 56.3
Sample C Male 62.4
Sample D Male 48.1
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 54.8
Min nTPM: 40.6
Sample B Female 49.2
Sample C Male 54.8
Sample D Male 40.6
Substantia nigra
nTPM: 63.6
Samples: 4

Max nTPM: 86.3
Min nTPM: 41.1
Sample A Female 86.3
Sample B Female 60.1
Sample C Male 67.0
Sample D Male 41.1
Superior colliculi
nTPM: 56.1
Samples: 4

Max nTPM: 68.8
Min nTPM: 48.7
Sample A Female 68.8
Sample B Female 49.4
Sample C Male 57.6
Sample D Male 48.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 171.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.2
Samples: 4

Max nTPM: 182.1
Min nTPM: 163.3
Sample A Male 182.1
Sample B Male 163.3
Sample C Female 175.4
Sample D Female 163.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
69013768 Antisense, RP_050309_02_H12, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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