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C22orf39
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:42.4 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Mouse:10.1 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.7
1781 Male, age 74, unknown 32.4
1854 Male, age 80, left hemisphere 32.1
2288 Male, age 75, left hemisphere 32.1
2481 Female, age 94, left hemisphere 32.1
2846 Female, age 79, unknown 31.8
2290 Female, age 72, unknown 31.3
2289 Male, age 61, right hemisphere 30.9
1857 Female, age 85, left hemisphere 30.8
Claustrum
nTPM: 33.8
2491 Male, age 75, both hemispheres 34.9
1956 Male, age 74, unknown 34.4
2645 Female, age 72, unknown 34.4
2198 Male, age 80, both hemispheres 34.3
2284 Female, age 91, both hemispheres 34.1
2568 Male, age 61, both hemispheres 34.0
2392 Female, age 94, both hemispheres 32.8
2292 Female, age 85, both hemispheres 32.6
2196 Female, age 79, unknown 32.4
Globus pallidus, externus
nTPM: 33.8
2567 Female, age 72, unknown 35.2
2772 Female, age 79, unknown 33.9
2646 Male, age 61, right hemisphere 33.8
2395 Male, age 75, both hemispheres 33.7
1996 Male, age 80, right hemisphere 32.4
Globus pallidus, internus
nTPM: 33.9
2287 Male, age 75, right hemisphere 34.9
2483 Female, age 94, right hemisphere 34.5
2566 Female, age 72, unknown 34.5
2778 Female, age 91, both hemispheres 34.2
1818 Male, age 74, unknown 34.1
2111 Female, age 85, right hemisphere 32.7
2037 Male, age 80, right hemisphere 32.5
Nucleus accumbens
nTPM: 32.0
2824 Male, age 61, right hemisphere 32.8
1856 Female, age 91, right hemisphere 32.6
2286 Male, age 75, left hemisphere 32.5
2698 Female, age 72, unknown 32.5
2391 Female, age 94, left hemisphere 31.7
1783 Male, age 74, unknown 31.6
1806 Female, age 85, left hemisphere 31.5
2732 Male, age 80, right hemisphere 31.2
Nucleus basalis of Meynert
nTPM: 32.6
2569 Male, age 61, both hemispheres 33.8
2484 Female, age 94, left hemisphere 32.5
2821 Male, age 75, both hemispheres 32.1
2393 Male, age 80, right hemisphere 32.0
Nucleus of the diagonal band
nTPM: 34.1
2775 Male, age 80, right hemisphere 36.1
2195 Female, age 85, both hemispheres 35.0
2029 Male, age 61, right hemisphere 34.7
1812 Female, age 91, both hemispheres 33.0
1979 Male, age 74, unknown 31.7
Olfactory tubercle
nTPM: 34.3
1998 Female, age 91, both hemispheres 34.5
1846 Male, age 80, right hemisphere 34.4
2487 Female, age 94, left hemisphere 34.3
2856 Male, age 75, right hemisphere 34.1
Putamen
nTPM: 32.8
2647 Male, age 75, left hemisphere 35.3
2489 Female, age 72, unknown 33.5
1937 Female, age 91, right hemisphere 32.5
2482 Female, age 94, left hemisphere 32.3
1829 Male, age 74, unknown 32.1
2466 Female, age 79, unknown 31.9
1838 Male, age 80, right hemisphere 31.7
Septal nuclei
nTPM: 32.7
1960 Male, age 74, unknown 34.9
2031 Female, age 72, unknown 34.0
2009 Female, age 91, both hemispheres 32.8
2629 Female, age 94, right hemisphere 32.5
2059 Female, age 85, both hemispheres 32.2
2394 Male, age 61, left hemisphere 31.2
2199 Male, age 80, right hemisphere 31.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 82.8
Min nTPM: 20.5
Std nTPM: 8.5
Median nTPM: 35.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 63.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 63.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 57.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 57.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 56.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.9
Samples: 246

Max nTPM: 78.1
Min nTPM: 13.9
Std nTPM: 9.1
Median nTPM: 40.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 73.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 72.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 71.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 70.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 68.9
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 68.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 63.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 60.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 59.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 58.9
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Brain - Putamen (basal ganglia)
Average nTPM: 42.4
Samples: 205

Max nTPM: 91.8
Min nTPM: 21.1
Std nTPM: 9.5
Median nTPM: 41.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 91.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 89.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 71.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 70.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 68.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 67.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 61.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 60.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 59.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 58.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 58.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.4
FF:10164-103B2 76 years, female 47.4
Globus pallidus
Scaled Tags Per Million: 51.8
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 44.4
Nucleus accumbens
Scaled Tags Per Million: 40.8
FF:10037-101F1 23-56 years, mixed 40.8
Putamen
Scaled Tags Per Million: 46.4
FF:10176-103C5 60 years, female 46.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 6.1
Sample A Male 6.1
Sample B Male 8.1
Sample C Female 12.6
Sample D Female 7.0
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.8
Sample A Male 10.3
Sample B Male 8.8
Sample C Female 10.3
Sample D Female 9.3
Ventral forebrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.0
Sample A Male 8.0
Sample B Male 10.4
Sample C Female 13.2
Sample D Female 8.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
70303803 Antisense, RP_050609_02_E09, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.0
70303803 Antisense, RP_050609_02_E09, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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