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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA:5.7 nTPM
GTEx:12.0 nTPM
FANTOM5:8.6 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:21.5 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
2846 Female, age 79, unknown 7.1
2290 Female, age 72, unknown 6.2
1857 Female, age 85, left hemisphere 6.0
1854 Male, age 80, left hemisphere 5.6
2288 Male, age 75, left hemisphere 5.6
2289 Male, age 61, right hemisphere 5.6
1781 Male, age 74, unknown 5.0
2481 Female, age 94, left hemisphere 4.7
Claustrum
nTPM: 5.4
1956 Male, age 74, unknown 6.5
2198 Male, age 80, both hemispheres 5.9
2568 Male, age 61, both hemispheres 5.8
2196 Female, age 79, unknown 5.7
2645 Female, age 72, unknown 5.3
2491 Male, age 75, both hemispheres 5.2
2392 Female, age 94, both hemispheres 5.0
2284 Female, age 91, both hemispheres 4.9
2292 Female, age 85, both hemispheres 4.6
Globus pallidus, externus
nTPM: 5.0
2567 Female, age 72, unknown 5.3
2395 Male, age 75, both hemispheres 5.1
2646 Male, age 61, right hemisphere 5.1
2772 Female, age 79, unknown 4.8
1996 Male, age 80, right hemisphere 4.6
Globus pallidus, internus
nTPM: 4.8
2483 Female, age 94, right hemisphere 5.1
2566 Female, age 72, unknown 5.1
2778 Female, age 91, both hemispheres 4.9
2037 Male, age 80, right hemisphere 4.7
2111 Female, age 85, right hemisphere 4.7
1818 Male, age 74, unknown 4.6
2287 Male, age 75, right hemisphere 4.6
Nucleus accumbens
nTPM: 5.4
1783 Male, age 74, unknown 7.2
1806 Female, age 85, left hemisphere 6.0
2824 Male, age 61, right hemisphere 5.5
2391 Female, age 94, left hemisphere 5.1
2286 Male, age 75, left hemisphere 4.9
2698 Female, age 72, unknown 4.9
1856 Female, age 91, right hemisphere 4.7
2732 Male, age 80, right hemisphere 4.6
Nucleus basalis of Meynert
nTPM: 5.4
2484 Female, age 94, left hemisphere 5.9
2393 Male, age 80, right hemisphere 5.8
2569 Male, age 61, both hemispheres 5.1
2821 Male, age 75, both hemispheres 4.9
Nucleus of the diagonal band
nTPM: 5.0
1812 Female, age 91, both hemispheres 5.6
2029 Male, age 61, right hemisphere 5.1
2195 Female, age 85, both hemispheres 4.9
2775 Male, age 80, right hemisphere 4.8
1979 Male, age 74, unknown 4.7
Olfactory tubercle
nTPM: 5.5
1846 Male, age 80, right hemisphere 6.0
1998 Female, age 91, both hemispheres 6.0
2487 Female, age 94, left hemisphere 5.1
2856 Male, age 75, right hemisphere 4.9
Putamen
nTPM: 5.6
2466 Female, age 79, unknown 6.6
1838 Male, age 80, right hemisphere 6.3
1937 Female, age 91, right hemisphere 6.1
1829 Male, age 74, unknown 5.5
2647 Male, age 75, left hemisphere 5.2
2482 Female, age 94, left hemisphere 4.8
2489 Female, age 72, unknown 4.8
Septal nuclei
nTPM: 5.6
2031 Female, age 72, unknown 8.1
2009 Female, age 91, both hemispheres 6.0
1960 Male, age 74, unknown 5.7
2629 Female, age 94, right hemisphere 5.1
2059 Female, age 85, both hemispheres 5.0
2394 Male, age 61, left hemisphere 5.0
2199 Male, age 80, right hemisphere 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.8
Samples: 246

Max nTPM: 18.3
Min nTPM: 3.5
Std nTPM: 2.9
Median nTPM: 10.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 18.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 17.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 17.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 17.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 17.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 17.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 16.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 16.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 16.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 23.2
Min nTPM: 5.0
Std nTPM: 3.2
Median nTPM: 12.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 23.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 21.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 20.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 20.5
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 19.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 18.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 18.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 17.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 17.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 17.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 17.3
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Brain - Putamen (basal ganglia)
Average nTPM: 11.7
Samples: 205

Max nTPM: 20.0
Min nTPM: 5.3
Std nTPM: 3.1
Median nTPM: 11.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 20.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 19.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 19.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 18.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 18.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 18.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 18.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 17.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 17.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 17.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 17.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.6
FF:10164-103B2 76 years, female 5.6
Globus pallidus
Scaled Tags Per Million: 5.3
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 2.8
Nucleus accumbens
Scaled Tags Per Million: 7.0
FF:10037-101F1 23-56 years, mixed 7.0
Putamen
Scaled Tags Per Million: 8.6
FF:10176-103C5 60 years, female 8.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Caudate
nTPM: 13.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 17.7
Sample C Male 13.1
Sample D Male 12.5
Putamen
nTPM: 12.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 9.0
Sample A Female 14.1
Sample B Female 12.5
Sample C Male 9.0
Sample D Male 14.3
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 15.1
Min nTPM: 9.6
Sample A Female 15.1
Sample B Female 15.0
Sample C Male 9.9
Sample D Male 9.6
Ventral pallidum
nTPM: 14.6
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 16.5
Sample C Male 13.1
Sample D Male 15.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.9
Sample A Male 16.3
Sample B Male 12.9
Sample C Female 17.8
Sample D Female 16.6
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 17.3
Sample A Male 18.6
Sample B Male 18.5
Sample C Female 17.6
Sample D Female 17.3
Ventral forebrain
nTPM: 21.5
Samples: 4

Max nTPM: 22.4
Min nTPM: 20.6
Sample A Male 21.7
Sample B Male 20.6
Sample C Female 21.3
Sample D Female 22.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
70445694 Antisense, RP_050614_04_D05, Mouse strain C57BL/6J (56 days, male) 0.5
71924363 Antisense, RP_050614_04_D05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.5
70445694 Antisense, RP_050614_04_D05, Mouse strain C57BL/6J (56 days, male) 0.5
71924363 Antisense, RP_050614_04_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.