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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:47.2 nTPM
HPA:47.2 nTPM
GTEx:44.2 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:94.2 nTPM
Allen mouse:5.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046841Antibody HPA052867Antibody CAB009746
Glial cells Not detectedNot detectedHigh
Neuronal cells MediumMediumMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Hippocampus
nTPM: 45.3
1898 Male, age 80, left hemisphere 49.4
1855 Male, age 76, left hemisphere 48.0
2621 Female, age 67, right hemisphere 44.5
2529 Female, age 94, left hemisphere 43.8
2148 Female, age 91, left hemisphere 43.3
1911 Female, age 85, right hemisphere 42.8
Dentate gyrus
nTPM: 45.3
2010 Male, age 76, both hemispheres 49.2
2530 Female, age 94, left hemisphere 47.3
1927 Female, age 91, both hemispheres 46.5
2246 Female, age 85, both hemispheres 44.1
2528 Male, age 74, both hemispheres 43.9
2531 Female, age 67, both hemispheres 41.1
Entorhinal gyrus
nTPM: 44.5
1787 Male, age 76, left hemisphere 47.2
2613 Female, age 94, left hemisphere 46.7
1938 Female, age 85, left hemisphere 45.9
2764 Male, age 80, right hemisphere 45.6
2117 Female, age 91, right hemisphere 43.3
2686 Male, age 75, right hemisphere 38.5
Hippocampus, CA1
nTPM: 47.2
2045 Male, age 76, both hemispheres 51.5
2749 Male, age 80, left hemisphere 50.0
1873 Female, age 85, both hemispheres 45.7
2527 Male, age 74, both hemispheres 44.9
2082 Female, age 91, right hemisphere 43.7
Hippocampus, CA2
nTPM: 46.2
1892 Male, age 76, both hemispheres 53.5
1963 Male, age 80, left hemisphere 46.3
2249 Male, age 74, both hemispheres 46.3
2113 Female, age 91, right hemisphere 43.9
1940 Female, age 85, left hemisphere 43.8
2437 Female, age 94, left hemisphere 43.6
Hippocampus, CA3
nTPM: 46.1
1867 Male, age 76, both hemispheres 49.9
2436 Male, age 74, both hemispheres 48.9
2620 Female, age 94, left hemisphere 47.5
2137 Male, age 80, left hemisphere 45.3
1891 Female, age 85, both hemispheres 43.4
2861 Female, age 67, both hemispheres 41.8
Parahippocampal cortex
nTPM: 42.8
2250 Female, age 67, right hemisphere 45.7
1850 Male, age 80, both hemispheres 45.3
2018 Male, age 76, both hemispheres 45.2
1990 Female, age 91, right hemisphere 44.3
1933 Female, age 85, both hemispheres 43.4
2693 Female, age 94, both hemispheres 42.3
2245 Female, age 91, both hemispheres 41.1
2532 Female, age 72, left hemisphere 41.1
2692 Male, age 74, both hemispheres 40.2
2622 Female, age 67, right hemisphere 39.4
Perirhinal gyrus
nTPM: 46.4
1847 Female, age 91, left hemisphere 49.8
1794 Male, age 80, right hemisphere 46.5
2848 Male, age 76, right hemisphere 45.9
1841 Female, age 85, right hemisphere 45.8
2521 Female, age 94, right hemisphere 44.0
Subiculum
nTPM: 42.9
1977 Female, age 85, both hemispheres 44.8
2042 Male, age 76, both hemispheres 44.4
1901 Male, age 80, both hemispheres 43.5
2619 Male, age 74, both hemispheres 42.8
2729 Female, age 91, right hemisphere 42.6
2438 Female, age 94, left hemisphere 39.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.2
Samples: 197

Max nTPM: 90.2
Min nTPM: 26.5
Std nTPM: 7.6
Median nTPM: 43.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 90.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 66.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 64.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 63.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 62.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 58.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 57.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 57.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 57.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 57.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.4
FF:10169-103B7 60 years, female 51.2
FF:10153-102I9 76 years, female 41.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.9
Samples: 4

Max nTPM: 42.7
Min nTPM: 30.9
Sample A Female 42.7
Sample B Female 36.1
Sample C Male 34.0
Sample D Male 30.9
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 38.6
Min nTPM: 26.0
Sample A Female 38.6
Sample B Female 30.2
Sample C Male 31.8
Sample D Male 26.0
Subiculum
nTPM: 34.6
Samples: 4

Max nTPM: 42.6
Min nTPM: 30.5
Sample A Female 42.6
Sample B Female 31.6
Sample C Male 33.5
Sample D Male 30.5
Ventral hippocampus
nTPM: 36.0
Samples: 4

Max nTPM: 46.2
Min nTPM: 27.0
Sample A Female 35.2
Sample B Female 27.0
Sample C Male 46.2
Sample D Male 35.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 94.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 87.3
Samples: 4

Max nTPM: 96.8
Min nTPM: 79.1
Sample A Male 79.1
Sample B Male 81.6
Sample C Female 91.8
Sample D Female 96.8
Hippocampal formation
nTPM: 94.2
Samples: 4

Max nTPM: 98.6
Min nTPM: 86.0
Sample A Male 98.6
Sample B Male 86.0
Sample C Female 96.6
Sample D Female 95.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.8
69626699 Antisense, RP_050428_01_B09, Mouse strain C57BL/6J (56 days, male) 8.8
70920093 Antisense, RP_050713_02_F08, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.