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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:17.3 nTPM
HPA:17.3 nTPM
GTEx:32.7 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:36.6 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053874
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.3
Sample id Sample description nTPM
Hippocampus
nTPM: 15.9
1898 Male, age 80, left hemisphere 20.9
2621 Female, age 67, right hemisphere 18.0
1855 Male, age 76, left hemisphere 16.1
1911 Female, age 85, right hemisphere 14.8
2529 Female, age 94, left hemisphere 13.1
2148 Female, age 91, left hemisphere 12.4
Dentate gyrus
nTPM: 14.9
2010 Male, age 76, both hemispheres 18.0
1927 Female, age 91, both hemispheres 17.7
2530 Female, age 94, left hemisphere 17.6
2246 Female, age 85, both hemispheres 12.8
2528 Male, age 74, both hemispheres 12.2
2531 Female, age 67, both hemispheres 11.1
Entorhinal gyrus
nTPM: 16.6
2613 Female, age 94, left hemisphere 20.3
2764 Male, age 80, right hemisphere 18.1
1787 Male, age 76, left hemisphere 16.9
1938 Female, age 85, left hemisphere 16.1
2117 Female, age 91, right hemisphere 15.4
2686 Male, age 75, right hemisphere 12.7
Hippocampus, CA1
nTPM: 17.3
2749 Male, age 80, left hemisphere 31.2
1873 Female, age 85, both hemispheres 15.3
2527 Male, age 74, both hemispheres 14.8
2045 Male, age 76, both hemispheres 13.3
2082 Female, age 91, right hemisphere 12.1
Hippocampus, CA2
nTPM: 16.3
1963 Male, age 80, left hemisphere 21.4
1892 Male, age 76, both hemispheres 18.4
2437 Female, age 94, left hemisphere 16.1
2249 Male, age 74, both hemispheres 14.8
1940 Female, age 85, left hemisphere 13.8
2113 Female, age 91, right hemisphere 13.1
Hippocampus, CA3
nTPM: 15.2
2137 Male, age 80, left hemisphere 24.3
1867 Male, age 76, both hemispheres 16.5
2861 Female, age 67, both hemispheres 14.1
2620 Female, age 94, left hemisphere 12.2
2436 Male, age 74, both hemispheres 12.0
1891 Female, age 85, both hemispheres 11.9
Parahippocampal cortex
nTPM: 14.8
2245 Female, age 91, both hemispheres 18.8
1990 Female, age 91, right hemisphere 17.2
1850 Male, age 80, both hemispheres 16.7
1933 Female, age 85, both hemispheres 16.4
2532 Female, age 72, left hemisphere 15.5
2018 Male, age 76, both hemispheres 14.8
2250 Female, age 67, right hemisphere 14.8
2693 Female, age 94, both hemispheres 13.1
2692 Male, age 74, both hemispheres 10.3
2622 Female, age 67, right hemisphere 10.2
Perirhinal gyrus
nTPM: 16.4
1847 Female, age 91, left hemisphere 20.2
1794 Male, age 80, right hemisphere 18.2
2521 Female, age 94, right hemisphere 15.4
1841 Female, age 85, right hemisphere 14.0
2848 Male, age 76, right hemisphere 13.9
Subiculum
nTPM: 13.3
1901 Male, age 80, both hemispheres 17.4
1977 Female, age 85, both hemispheres 15.1
2042 Male, age 76, both hemispheres 14.3
2619 Male, age 74, both hemispheres 12.1
2729 Female, age 91, right hemisphere 11.9
2438 Female, age 94, left hemisphere 8.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.7
Samples: 197

Max nTPM: 94.9
Min nTPM: 12.1
Std nTPM: 13.2
Median nTPM: 30.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 94.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 74.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 71.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 69.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 66.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 63.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 62.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 60.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 58.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 58.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 56.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.5
FF:10169-103B7 60 years, female 28.2
FF:10153-102I9 76 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.4
Samples: 4

Max nTPM: 50.6
Min nTPM: 26.3
Sample A Female 50.6
Sample B Female 39.2
Sample C Male 26.3
Sample D Male 37.4
Entorhinal cortex
nTPM: 29.3
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.2
Sample A Female 31.7
Sample B Female 32.1
Sample C Male 28.3
Sample D Male 25.2
Subiculum
nTPM: 25.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 19.8
Sample A Female 35.4
Sample B Female 22.2
Sample C Male 23.1
Sample D Male 19.8
Ventral hippocampus
nTPM: 31.4
Samples: 4

Max nTPM: 43.6
Min nTPM: 18.9
Sample A Female 29.6
Sample B Female 18.9
Sample C Male 33.3
Sample D Male 43.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.6
Samples: 4

Max nTPM: 43.4
Min nTPM: 32.6
Sample A Male 37.3
Sample B Male 43.4
Sample C Female 32.6
Sample D Female 33.1
Hippocampal formation
nTPM: 33.8
Samples: 4

Max nTPM: 37.0
Min nTPM: 30.2
Sample A Male 35.3
Sample B Male 32.8
Sample C Female 30.2
Sample D Female 37.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
73732148 Antisense, RP_051121_04_A06, Mouse strain C57BL/6J (56 days, male) 2.3
67978697 Antisense, RP_040923_01_F01, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.