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PDCD6
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.4 nTPM
HPA:90.4 nTPM
GTEx:91.1 nTPM
FANTOM5:85.0 Scaled Tags Per Million
Pig:75.9 nTPM
Mouse:119.5 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 90.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 88.5
2481 Female, age 94, left hemisphere 94.0
2288 Male, age 75, left hemisphere 92.5
2846 Female, age 79, unknown 89.0
1857 Female, age 85, left hemisphere 88.5
2290 Female, age 72, unknown 88.2
1854 Male, age 80, left hemisphere 86.5
1781 Male, age 74, unknown 85.4
2289 Male, age 61, right hemisphere 83.5
Claustrum
nTPM: 83.9
1956 Male, age 74, unknown 86.6
2392 Female, age 94, both hemispheres 86.2
2196 Female, age 79, unknown 85.9
2198 Male, age 80, both hemispheres 85.9
2292 Female, age 85, both hemispheres 83.9
2491 Male, age 75, both hemispheres 83.6
2284 Female, age 91, both hemispheres 81.9
2568 Male, age 61, both hemispheres 81.2
2645 Female, age 72, unknown 80.1
Globus pallidus, externus
nTPM: 89.0
2772 Female, age 79, unknown 97.6
1996 Male, age 80, right hemisphere 92.7
2395 Male, age 75, both hemispheres 92.5
2646 Male, age 61, right hemisphere 84.5
2567 Female, age 72, unknown 77.7
Globus pallidus, internus
nTPM: 90.4
2287 Male, age 75, right hemisphere 97.5
2483 Female, age 94, right hemisphere 94.7
2778 Female, age 91, both hemispheres 93.8
2037 Male, age 80, right hemisphere 91.8
1818 Male, age 74, unknown 88.9
2111 Female, age 85, right hemisphere 86.8
2566 Female, age 72, unknown 79.4
Nucleus accumbens
nTPM: 89.0
2286 Male, age 75, left hemisphere 95.7
1856 Female, age 91, right hemisphere 90.2
2391 Female, age 94, left hemisphere 89.9
1806 Female, age 85, left hemisphere 89.4
2698 Female, age 72, unknown 89.3
1783 Male, age 74, unknown 85.8
2732 Male, age 80, right hemisphere 85.7
2824 Male, age 61, right hemisphere 85.6
Nucleus basalis of Meynert
nTPM: 85.1
2393 Male, age 80, right hemisphere 85.6
2484 Female, age 94, left hemisphere 85.6
2821 Male, age 75, both hemispheres 84.8
2569 Male, age 61, both hemispheres 84.4
Nucleus of the diagonal band
nTPM: 89.8
1812 Female, age 91, both hemispheres 95.2
2775 Male, age 80, right hemisphere 91.6
2195 Female, age 85, both hemispheres 88.8
2029 Male, age 61, right hemisphere 87.9
1979 Male, age 74, unknown 85.5
Olfactory tubercle
nTPM: 87.0
1846 Male, age 80, right hemisphere 90.0
1998 Female, age 91, both hemispheres 90.0
2487 Female, age 94, left hemisphere 84.4
2856 Male, age 75, right hemisphere 83.5
Putamen
nTPM: 85.9
2482 Female, age 94, left hemisphere 90.3
2466 Female, age 79, unknown 89.5
1937 Female, age 91, right hemisphere 88.1
1838 Male, age 80, right hemisphere 87.3
1829 Male, age 74, unknown 85.1
2647 Male, age 75, left hemisphere 80.9
2489 Female, age 72, unknown 79.9
Septal nuclei
nTPM: 89.0
2031 Female, age 72, unknown 100.0
1960 Male, age 74, unknown 92.2
2009 Female, age 91, both hemispheres 88.5
2629 Female, age 94, right hemisphere 86.6
2199 Male, age 80, right hemisphere 85.4
2394 Male, age 61, left hemisphere 85.1
2059 Female, age 85, both hemispheres 85.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 91.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 88.2
Samples: 246

Max nTPM: 154.4
Min nTPM: 55.9
Std nTPM: 15.8
Median nTPM: 85.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 154.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 154.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 151.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 142.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 140.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 128.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 127.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 126.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 125.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 122.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 90.7
Samples: 246

Max nTPM: 205.4
Min nTPM: 62.7
Std nTPM: 17.1
Median nTPM: 89.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 205.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 160.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 153.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 142.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 142.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 133.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 133.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 132.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 127.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 120.3
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 115.9
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Brain - Putamen (basal ganglia)
Average nTPM: 91.1
Samples: 205

Max nTPM: 156.9
Min nTPM: 64.1
Std nTPM: 14.6
Median nTPM: 89.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 156.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 133.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 131.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 128.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 124.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 123.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 122.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 121.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 120.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 118.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 115.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.5
FF:10164-103B2 76 years, female 76.5
Globus pallidus
Scaled Tags Per Million: 85.1
FF:10161-103A8 76 years, female 88.8
FF:10175-103C4 60 years, female 81.3
Nucleus accumbens
Scaled Tags Per Million: 76.1
FF:10037-101F1 23-56 years, mixed 76.1
Putamen
Scaled Tags Per Million: 77.2
FF:10176-103C5 60 years, female 77.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 75.9
Pig sample Sample description nTPM
Caudate
nTPM: 55.3
Samples: 4

Max nTPM: 75.3
Min nTPM: 44.3
Sample A Female 44.3
Sample B Female 54.7
Sample C Male 75.3
Sample D Male 47.0
Putamen
nTPM: 75.9
Samples: 4

Max nTPM: 109.0
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 67.2
Sample C Male 109.0
Sample D Male 77.4
Septum
nTPM: 46.3
Samples: 4

Max nTPM: 53.2
Min nTPM: 39.7
Sample A Female 49.3
Sample B Female 43.1
Sample C Male 39.7
Sample D Male 53.2
Ventral pallidum
nTPM: 47.5
Samples: 4

Max nTPM: 57.0
Min nTPM: 43.1
Sample A Female 43.1
Sample B Female 57.0
Sample C Male 45.2
Sample D Male 44.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 119.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 119.5
Samples: 4

Max nTPM: 124.9
Min nTPM: 110.0
Sample A Male 124.9
Sample B Male 121.1
Sample C Female 122.1
Sample D Female 110.0
Septum
nTPM: 85.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 77.8
Sample A Male 77.8
Sample B Male 83.9
Sample C Female 89.8
Sample D Female 91.0
Ventral forebrain
nTPM: 108.7
Samples: 4

Max nTPM: 117.3
Min nTPM: 100.5
Sample A Male 111.0
Sample B Male 100.5
Sample C Female 105.9
Sample D Female 117.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
68191144 Antisense, RP_041122_02_H02, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 1.8
68191144 Antisense, RP_041122_02_H02, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.