ABOUTMENU
HELP
NEWS
PIGY
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:4.1 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Mouse:42.7 nTPM
Allen mouse:6.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA059018
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.2
2481 Female, age 94, left hemisphere 37.1
2290 Female, age 72, unknown 34.8
1854 Male, age 80, left hemisphere 34.5
2288 Male, age 75, left hemisphere 34.5
1857 Female, age 85, left hemisphere 34.2
2846 Female, age 79, unknown 33.9
1781 Male, age 74, unknown 32.6
2289 Male, age 61, right hemisphere 32.1
Claustrum
nTPM: 32.6
1956 Male, age 74, unknown 34.3
2491 Male, age 75, both hemispheres 34.1
2198 Male, age 80, both hemispheres 33.5
2292 Female, age 85, both hemispheres 33.1
2196 Female, age 79, unknown 32.9
2392 Female, age 94, both hemispheres 32.6
2284 Female, age 91, both hemispheres 31.5
2568 Male, age 61, both hemispheres 30.9
2645 Female, age 72, unknown 30.4
Globus pallidus, externus
nTPM: 36.4
2772 Female, age 79, unknown 40.9
1996 Male, age 80, right hemisphere 39.4
2646 Male, age 61, right hemisphere 35.0
2395 Male, age 75, both hemispheres 34.6
2567 Female, age 72, unknown 32.2
Globus pallidus, internus
nTPM: 37.0
2287 Male, age 75, right hemisphere 40.0
2778 Female, age 91, both hemispheres 38.9
2483 Female, age 94, right hemisphere 38.4
2111 Female, age 85, right hemisphere 36.5
2037 Male, age 80, right hemisphere 36.2
1818 Male, age 74, unknown 36.1
2566 Female, age 72, unknown 32.9
Nucleus accumbens
nTPM: 34.6
2286 Male, age 75, left hemisphere 37.5
2391 Female, age 94, left hemisphere 35.6
1806 Female, age 85, left hemisphere 35.4
2698 Female, age 72, unknown 34.1
1856 Female, age 91, right hemisphere 33.9
2824 Male, age 61, right hemisphere 33.6
1783 Male, age 74, unknown 33.5
2732 Male, age 80, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 33.8
2484 Female, age 94, left hemisphere 34.2
2569 Male, age 61, both hemispheres 34.2
2821 Male, age 75, both hemispheres 33.5
2393 Male, age 80, right hemisphere 33.1
Nucleus of the diagonal band
nTPM: 33.4
1812 Female, age 91, both hemispheres 34.8
2775 Male, age 80, right hemisphere 34.5
1979 Male, age 74, unknown 33.2
2195 Female, age 85, both hemispheres 32.9
2029 Male, age 61, right hemisphere 31.7
Olfactory tubercle
nTPM: 32.8
1846 Male, age 80, right hemisphere 34.1
2856 Male, age 75, right hemisphere 32.5
1998 Female, age 91, both hemispheres 32.4
2487 Female, age 94, left hemisphere 32.1
Putamen
nTPM: 33.5
2482 Female, age 94, left hemisphere 36.8
2466 Female, age 79, unknown 33.8
1937 Female, age 91, right hemisphere 33.3
1838 Male, age 80, right hemisphere 33.2
2647 Male, age 75, left hemisphere 33.0
1829 Male, age 74, unknown 32.7
2489 Female, age 72, unknown 32.0
Septal nuclei
nTPM: 33.1
2031 Female, age 72, unknown 34.6
1960 Male, age 74, unknown 34.1
2199 Male, age 80, right hemisphere 34.1
2009 Female, age 91, both hemispheres 32.7
2394 Male, age 61, left hemisphere 32.3
2059 Female, age 85, both hemispheres 32.1
2629 Female, age 94, right hemisphere 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 21.8
Min nTPM: 0.0
Std nTPM: 5.6
Median nTPM: 0.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 21.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 20.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 19.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 19.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 19.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 18.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 17.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 17.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 17.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 16.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.1
Samples: 246

Max nTPM: 27.6
Min nTPM: 0.0
Std nTPM: 5.9
Median nTPM: 0.6
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 27.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 25.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 25.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 22.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 21.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 20.8
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 20.2
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 18.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 18.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 17.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 17.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 3.2
Samples: 205

Max nTPM: 25.5
Min nTPM: 0.0
Std nTPM: 5.5
Median nTPM: 0.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 25.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 24.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 23.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 22.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 22.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 22.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 19.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 16.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 16.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 15.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 14.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.7
FF:10164-103B2 76 years, female 100.7
Globus pallidus
Scaled Tags Per Million: 147.3
FF:10175-103C4 60 years, female 179.9
FF:10161-103A8 76 years, female 114.7
Nucleus accumbens
Scaled Tags Per Million: 78.8
FF:10037-101F1 23-56 years, mixed 78.8
Putamen
Scaled Tags Per Million: 96.8
FF:10176-103C5 60 years, female 96.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.4
Samples: 4

Max nTPM: 42.5
Min nTPM: 21.5
Sample A Male 35.0
Sample B Male 42.5
Sample C Female 21.5
Sample D Female 30.6
Septum
nTPM: 42.7
Samples: 4

Max nTPM: 46.6
Min nTPM: 40.4
Sample A Male 42.2
Sample B Male 41.7
Sample C Female 46.6
Sample D Female 40.4
Ventral forebrain
nTPM: 40.2
Samples: 4

Max nTPM: 48.9
Min nTPM: 31.8
Sample A Male 45.6
Sample B Male 34.4
Sample C Female 48.9
Sample D Female 31.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.1
199214 Antisense, RP_040604_02_E05, Mouse strain C57BL/6J (56 days, male) 6.1
Pallidum
Expression energy: 5.8
199214 Antisense, RP_040604_02_E05, Mouse strain C57BL/6J (56 days, male) 5.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.