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NHLRC4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.5 nTPM
HPA:0.5 nTPM
GTEx:1.5 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Mouse:0.8 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.3
2289 Male, age 61, right hemisphere 0.7
2846 Female, age 79, unknown 0.4
1781 Male, age 74, unknown 0.3
2290 Female, age 72, unknown 0.3
1854 Male, age 80, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.2
2481 Female, age 94, left hemisphere 0.2
2288 Male, age 75, left hemisphere 0.1
Claustrum
nTPM: 0.2
2196 Female, age 79, unknown 0.3
2491 Male, age 75, both hemispheres 0.3
1956 Male, age 74, unknown 0.2
2198 Male, age 80, both hemispheres 0.2
2284 Female, age 91, both hemispheres 0.2
2292 Female, age 85, both hemispheres 0.2
2568 Male, age 61, both hemispheres 0.2
2645 Female, age 72, unknown 0.2
2392 Female, age 94, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.2
2772 Female, age 79, unknown 0.3
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.2
2567 Female, age 72, unknown 0.2
2646 Male, age 61, right hemisphere 0.2
Globus pallidus, internus
nTPM: 0.2
1818 Male, age 74, unknown 0.2
2566 Female, age 72, unknown 0.2
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.4
2732 Male, age 80, right hemisphere 2.1
1783 Male, age 74, unknown 0.2
2286 Male, age 75, left hemisphere 0.2
2391 Female, age 94, left hemisphere 0.2
1806 Female, age 85, left hemisphere 0.1
1856 Female, age 91, right hemisphere 0.1
2698 Female, age 72, unknown 0.1
2824 Male, age 61, right hemisphere 0.1
Nucleus basalis of Meynert
nTPM: 0.1
2484 Female, age 94, left hemisphere 0.2
2821 Male, age 75, both hemispheres 0.2
2393 Male, age 80, right hemisphere 0.1
2569 Male, age 61, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.3
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.3
1812 Female, age 91, both hemispheres 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.2
1846 Male, age 80, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.2
2487 Female, age 94, left hemisphere 0.2
2856 Male, age 75, right hemisphere 0.2
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.3
2647 Male, age 75, left hemisphere 0.3
1829 Male, age 74, unknown 0.2
1937 Female, age 91, right hemisphere 0.2
2482 Female, age 94, left hemisphere 0.2
2489 Female, age 72, unknown 0.2
1838 Male, age 80, right hemisphere 0.1
Septal nuclei
nTPM: 0.5
2199 Male, age 80, right hemisphere 1.1
2009 Female, age 91, both hemispheres 0.8
2629 Female, age 94, right hemisphere 0.7
1960 Male, age 74, unknown 0.3
2031 Female, age 72, unknown 0.2
2059 Female, age 85, both hemispheres 0.2
2394 Male, age 61, left hemisphere 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 16.7
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 0.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 16.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 15.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 14.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 14.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 12.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 11.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 10.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 10.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 10.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 9.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 17.2
Min nTPM: 0.0
Std nTPM: 2.2
Median nTPM: 0.2
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 17.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 14.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 11.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 10.6
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 10.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 9.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 9.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 8.1
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 6.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 6.3
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 1.9
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 0.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 0.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 0.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 0.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 0.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 0.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 0.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 0.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.7
FF:10164-103B2 76 years, female 1.7
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.4
FF:10037-101F1 23-56 years, mixed 0.4
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Male 0.5
Sample B Male 0.8
Sample C Female 0.3
Sample D Female 0.2
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.6
Sample C Female 1.0
Sample D Female 1.3
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.2
Sample C Female 0.0
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.