ABOUTMENU
HELP
NEWS
SMIM6
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:6.1 nTPM
FANTOM5:5.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.3
1830 Male, age 51, unknown 5.1
1870 Female, age 42, unknown 5.0
2411 Female, age 72, unknown 5.0
2019 Male, age 18, unknown 4.7
1833 Male, age 53, unknown 4.6
2586 Male, age 75, left hemisphere 4.2
2828 Female, age 72, unknown 4.2
1827 Male, age 72, unknown 3.5
2219 Male, age 76, both hemispheres 3.5
2666 Male, age 74, left hemisphere 3.5
Dorsal raphe nucleus
nTPM: 3.5
2750 Male, age 76, both hemispheres 5.3
2016 Female, age 72, unknown 3.5
1828 Male, age 53, unknown 3.3
2047 Male, age 72, unknown 2.7
2298 Female, age 72, unknown 2.7
Inferior colliculus
nTPM: 3.2
1890 Male, age 53, unknown 3.4
2849 Male, age 72, unknown 3.4
1848 Female, age 42, unknown 3.0
2097 Female, age 72, unknown 3.0
Median raphe nucleus
nTPM: 3.5
2220 Male, age 76, midline 3.5
Pedunculopontine tegmental nucleus
nTPM: 4.2
2338 Male, age 61, both hemispheres 4.4
2334 Male, age 80, both hemispheres 4.2
1921 Female, age 85, both hemispheres 4.1
Periaquaductal grey, anterior
nTPM: 3.1
1947 Male, age 18, unknown 3.4
2502 Female, age 75, unknown 3.4
1795 Male, age 51, unknown 2.5
Periaquaductal grey, dorsal
nTPM: 2.8
2464 Female, age 72, unknown 3.5
1831 Male, age 72, unknown 2.9
2850 Male, age 76, both hemispheres 2.7
1840 Male, age 53, unknown 2.2
Periaquaductal grey, lateral
nTPM: 3.4
2053 Male, age 18, unknown 3.5
2140 Male, age 76, both hemispheres 3.3
2272 Male, age 74, both hemispheres 3.3
Pretectal area
nTPM: 3.5
2316 Male, age 76, right hemisphere 4.8
2407 Male, age 75, both hemispheres 4.5
1815 Male, age 53, unknown 4.1
2667 Female, age 75, unknown 3.9
2007 Male, age 72, unknown 3.7
2825 Male, age 18, unknown 3.5
2273 Male, age 74, both hemispheres 3.3
1817 Female, age 42, unknown 3.2
2224 Female, age 72, unknown 3.0
1944 Female, age 72, unknown 2.3
1816 Male, age 51, unknown 2.2
Red nucleus
nTPM: 5.6
2823 Male, age 76, right hemisphere 6.7
1904 Male, age 53, unknown 6.4
1865 Male, age 51, unknown 6.3
2769 Male, age 72, unknown 6.3
2227 Male, age 72, unknown 6.1
2785 Male, age 18, unknown 5.9
1821 Female, age 72, unknown 5.3
2503 Female, age 72, unknown 5.3
1954 Female, age 42, unknown 5.0
2725 Female, age 75, unknown 4.8
2584 Male, age 75, left hemisphere 4.6
2588 Male, age 74, left hemisphere 4.5
Substantia nigra
nTPM: 3.6
1851 Male, age 51, unknown 4.3
2583 Male, age 75, right hemisphere 4.3
2409 Female, age 72, unknown 4.1
2590 Female, age 75, unknown 3.8
1889 Female, age 72, unknown 3.6
2699 Male, age 18, unknown 3.6
1941 Male, age 53, unknown 3.2
2241 Male, age 72, unknown 3.1
1916 Female, age 42, unknown 3.0
2665 Male, age 74, both hemispheres 2.8
Superior colliculus
nTPM: 4.0
1913 Female, age 42, unknown 5.1
1895 Male, age 76, right hemisphere 4.8
1995 Male, age 72, unknown 4.7
1839 Male, age 51, unknown 4.4
2587 Male, age 74, left hemisphere 4.0
2664 Male, age 75, both hemispheres 3.9
1796 Male, age 53, unknown 3.4
2087 Female, age 72, unknown 3.4
2668 Female, age 75, unknown 3.3
2261 Male, age 18, unknown 2.7
Ventral tegmental area
nTPM: 3.6
1942 Male, age 51, unknown 3.8
2223 Female, age 72, unknown 3.8
2021 Male, age 53, unknown 3.7
2410 Female, age 72, unknown 3.7
1915 Female, age 42, unknown 3.6
2218 Male, age 76, both hemispheres 3.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.1
Samples: 139

Max nTPM: 24.7
Min nTPM: 0.9
Std nTPM: 4.3
Median nTPM: 4.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 24.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 16.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 12.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.2
FF:10158-103A5 76 years, female 5.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.