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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:18.1 nTPM
FANTOM5:14.0 Scaled Tags Per Million
Mouse:8.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
2586 Male, age 75, left hemisphere 39.3
2828 Female, age 72, unknown 36.3
1827 Male, age 72, unknown 35.9
2019 Male, age 18, unknown 35.6
2411 Female, age 72, unknown 35.5
2666 Male, age 74, left hemisphere 35.4
1870 Female, age 42, unknown 34.9
1833 Male, age 53, unknown 34.7
1830 Male, age 51, unknown 34.3
2219 Male, age 76, both hemispheres 32.2
Dorsal raphe nucleus
nTPM: 35.1
2298 Female, age 72, unknown 35.8
1828 Male, age 53, unknown 35.7
2047 Male, age 72, unknown 35.4
2016 Female, age 72, unknown 34.3
2750 Male, age 76, both hemispheres 34.2
Inferior colliculus
nTPM: 35.2
1848 Female, age 42, unknown 35.7
1890 Male, age 53, unknown 35.6
2849 Male, age 72, unknown 34.9
2097 Female, age 72, unknown 34.4
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Pedunculopontine tegmental nucleus
nTPM: 35.0
1921 Female, age 85, both hemispheres 35.9
2338 Male, age 61, both hemispheres 35.7
2334 Male, age 80, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 35.7
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 35.4
2502 Female, age 75, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 34.6
1831 Male, age 72, unknown 35.5
2850 Male, age 76, both hemispheres 34.8
2464 Female, age 72, unknown 34.1
1840 Male, age 53, unknown 34.0
Periaquaductal grey, lateral
nTPM: 34.2
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 34.2
2272 Male, age 74, both hemispheres 33.7
Pretectal area
nTPM: 35.2
1817 Female, age 42, unknown 36.9
1816 Male, age 51, unknown 36.7
1815 Male, age 53, unknown 36.2
1944 Female, age 72, unknown 36.2
2007 Male, age 72, unknown 35.7
2667 Female, age 75, unknown 35.2
2316 Male, age 76, right hemisphere 35.1
2224 Female, age 72, unknown 34.1
2825 Male, age 18, unknown 34.1
2273 Male, age 74, both hemispheres 33.5
2407 Male, age 75, both hemispheres 33.3
Red nucleus
nTPM: 35.5
1821 Female, age 72, unknown 37.9
2823 Male, age 76, right hemisphere 36.5
1865 Male, age 51, unknown 36.0
1954 Female, age 42, unknown 35.9
2503 Female, age 72, unknown 35.8
2769 Male, age 72, unknown 35.4
2588 Male, age 74, left hemisphere 35.3
2584 Male, age 75, left hemisphere 35.2
2785 Male, age 18, unknown 35.2
1904 Male, age 53, unknown 34.7
2725 Female, age 75, unknown 34.4
2227 Male, age 72, unknown 33.5
Substantia nigra
nTPM: 36.2
1916 Female, age 42, unknown 38.2
1851 Male, age 51, unknown 36.9
1941 Male, age 53, unknown 36.4
2583 Male, age 75, right hemisphere 36.4
2699 Male, age 18, unknown 36.4
2241 Male, age 72, unknown 36.3
2590 Female, age 75, unknown 36.3
1889 Female, age 72, unknown 36.0
2665 Male, age 74, both hemispheres 36.0
2409 Female, age 72, unknown 32.7
Superior colliculus
nTPM: 35.2
2668 Female, age 75, unknown 36.3
2087 Female, age 72, unknown 36.0
1796 Male, age 53, unknown 35.9
1913 Female, age 42, unknown 35.6
2587 Male, age 74, left hemisphere 35.5
1895 Male, age 76, right hemisphere 35.1
2664 Male, age 75, both hemispheres 34.7
1995 Male, age 72, unknown 34.6
2261 Male, age 18, unknown 34.4
1839 Male, age 51, unknown 33.8
Ventral tegmental area
nTPM: 35.3
2410 Female, age 72, unknown 37.5
1915 Female, age 42, unknown 35.8
2218 Male, age 76, both hemispheres 35.8
1942 Male, age 51, unknown 35.1
2021 Male, age 53, unknown 34.0
2223 Female, age 72, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 32.4
Min nTPM: 6.7
Std nTPM: 4.5
Median nTPM: 17.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 32.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 27.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 26.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 25.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 25.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.0
FF:10158-103A5 76 years, female 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 8.2
Sample A Male 8.4
Sample B Male 8.2
Sample C Female 9.3
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71210753 Antisense, RP_050810_04_E04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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