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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:30.4 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:17.3 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031637
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Hippocampus
nTPM: 31.8
2148 Female, age 91, left hemisphere 33.1
1898 Male, age 80, left hemisphere 32.8
2621 Female, age 67, right hemisphere 32.7
1855 Male, age 76, left hemisphere 32.4
1911 Female, age 85, right hemisphere 31.1
2529 Female, age 94, left hemisphere 29.0
Dentate gyrus
nTPM: 31.0
2531 Female, age 67, both hemispheres 32.6
1927 Female, age 91, both hemispheres 32.5
2246 Female, age 85, both hemispheres 31.0
2528 Male, age 74, both hemispheres 30.7
2010 Male, age 76, both hemispheres 29.6
2530 Female, age 94, left hemisphere 29.4
Entorhinal gyrus
nTPM: 32.3
2613 Female, age 94, left hemisphere 34.8
2764 Male, age 80, right hemisphere 33.1
1787 Male, age 76, left hemisphere 32.5
1938 Female, age 85, left hemisphere 31.9
2686 Male, age 75, right hemisphere 31.3
2117 Female, age 91, right hemisphere 30.5
Hippocampus, CA1
nTPM: 31.0
1873 Female, age 85, both hemispheres 32.5
2045 Male, age 76, both hemispheres 32.1
2749 Male, age 80, left hemisphere 31.2
2527 Male, age 74, both hemispheres 29.6
2082 Female, age 91, right hemisphere 29.5
Hippocampus, CA2
nTPM: 30.9
2437 Female, age 94, left hemisphere 32.7
1892 Male, age 76, both hemispheres 32.3
1963 Male, age 80, left hemisphere 30.6
1940 Female, age 85, left hemisphere 30.3
2113 Female, age 91, right hemisphere 30.3
2249 Male, age 74, both hemispheres 29.5
Hippocampus, CA3
nTPM: 31.6
2620 Female, age 94, left hemisphere 34.1
2137 Male, age 80, left hemisphere 31.9
1867 Male, age 76, both hemispheres 31.7
2861 Female, age 67, both hemispheres 31.1
1891 Female, age 85, both hemispheres 30.9
2436 Male, age 74, both hemispheres 29.8
Parahippocampal cortex
nTPM: 31.5
1850 Male, age 80, both hemispheres 33.6
2245 Female, age 91, both hemispheres 32.4
2692 Male, age 74, both hemispheres 32.3
2532 Female, age 72, left hemisphere 31.3
2018 Male, age 76, both hemispheres 31.2
2250 Female, age 67, right hemisphere 31.1
1990 Female, age 91, right hemisphere 31.0
2622 Female, age 67, right hemisphere 31.0
1933 Female, age 85, both hemispheres 30.9
2693 Female, age 94, both hemispheres 30.3
Perirhinal gyrus
nTPM: 32.9
1847 Female, age 91, left hemisphere 33.8
1794 Male, age 80, right hemisphere 33.7
2848 Male, age 76, right hemisphere 33.7
2521 Female, age 94, right hemisphere 31.9
1841 Female, age 85, right hemisphere 31.6
Subiculum
nTPM: 29.9
1901 Male, age 80, both hemispheres 31.2
2619 Male, age 74, both hemispheres 30.8
1977 Female, age 85, both hemispheres 30.3
2729 Female, age 91, right hemisphere 29.7
2438 Female, age 94, left hemisphere 29.0
2042 Male, age 76, both hemispheres 28.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.4
Samples: 197

Max nTPM: 53.3
Min nTPM: 15.1
Std nTPM: 5.9
Median nTPM: 30.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 49.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 46.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 42.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 42.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 41.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 40.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 40.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 39.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 39.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 39.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 41.0
FF:10169-103B7 60 years, female 46.0
FF:10153-102I9 76 years, female 36.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.9
Sample A Female 14.8
Sample B Female 14.6
Sample C Male 13.6
Sample D Male 11.9
Entorhinal cortex
nTPM: 10.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.6
Sample A Female 10.7
Sample B Female 9.7
Sample C Male 10.6
Sample D Male 9.6
Subiculum
nTPM: 10.9
Samples: 4

Max nTPM: 11.2
Min nTPM: 10.6
Sample A Female 10.8
Sample B Female 11.1
Sample C Male 11.2
Sample D Male 10.6
Ventral hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.0
Sample A Female 12.7
Sample B Female 12.0
Sample C Male 13.2
Sample D Male 13.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.8
Sample A Male 16.1
Sample B Male 16.6
Sample C Female 13.9
Sample D Female 13.8
Hippocampal formation
nTPM: 17.3
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.7
Sample A Male 19.1
Sample B Male 17.3
Sample C Female 15.7
Sample D Female 17.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
68844259 Antisense, RP_050222_01_C03, Mouse strain C57BL/6J (56 days, male) 4.2
74819330 Antisense, RP_060315_02_E06, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.