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NCOA4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.5 nTPM
HPA:52.5 nTPM
GTEx:38.1 nTPM
FANTOM5:132.3 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:91.5 nTPM

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.4
2288 Male, age 75, left hemisphere 50.3
2481 Female, age 94, left hemisphere 49.9
2846 Female, age 79, unknown 45.2
1857 Female, age 85, left hemisphere 42.0
2290 Female, age 72, unknown 41.9
1854 Male, age 80, left hemisphere 40.8
1781 Male, age 74, unknown 38.9
2289 Male, age 61, right hemisphere 37.6
Claustrum
nTPM: 38.0
2392 Female, age 94, both hemispheres 42.9
1956 Male, age 74, unknown 41.0
2198 Male, age 80, both hemispheres 40.8
2196 Female, age 79, unknown 39.5
2491 Male, age 75, both hemispheres 37.5
2292 Female, age 85, both hemispheres 37.2
2568 Male, age 61, both hemispheres 35.5
2284 Female, age 91, both hemispheres 35.3
2645 Female, age 72, unknown 32.1
Globus pallidus, externus
nTPM: 50.1
2772 Female, age 79, unknown 58.1
1996 Male, age 80, right hemisphere 56.9
2395 Male, age 75, both hemispheres 54.9
2646 Male, age 61, right hemisphere 42.1
2567 Female, age 72, unknown 38.4
Globus pallidus, internus
nTPM: 52.5
2287 Male, age 75, right hemisphere 58.8
2778 Female, age 91, both hemispheres 58.2
1818 Male, age 74, unknown 54.4
2037 Male, age 80, right hemisphere 53.3
2483 Female, age 94, right hemisphere 52.4
2111 Female, age 85, right hemisphere 48.3
2566 Female, age 72, unknown 41.7
Nucleus accumbens
nTPM: 43.0
2286 Male, age 75, left hemisphere 51.4
2391 Female, age 94, left hemisphere 51.1
2698 Female, age 72, unknown 43.7
1856 Female, age 91, right hemisphere 42.2
1806 Female, age 85, left hemisphere 41.1
1783 Male, age 74, unknown 38.2
2732 Male, age 80, right hemisphere 38.2
2824 Male, age 61, right hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 42.5
2821 Male, age 75, both hemispheres 44.0
2569 Male, age 61, both hemispheres 43.0
2484 Female, age 94, left hemisphere 42.5
2393 Male, age 80, right hemisphere 40.6
Nucleus of the diagonal band
nTPM: 41.4
1812 Female, age 91, both hemispheres 45.5
2775 Male, age 80, right hemisphere 42.8
2195 Female, age 85, both hemispheres 40.1
1979 Male, age 74, unknown 39.6
2029 Male, age 61, right hemisphere 39.0
Olfactory tubercle
nTPM: 39.6
1846 Male, age 80, right hemisphere 44.0
1998 Female, age 91, both hemispheres 38.7
2856 Male, age 75, right hemisphere 38.2
2487 Female, age 94, left hemisphere 37.4
Putamen
nTPM: 42.0
2482 Female, age 94, left hemisphere 51.3
1937 Female, age 91, right hemisphere 43.6
2466 Female, age 79, unknown 42.1
1829 Male, age 74, unknown 41.5
1838 Male, age 80, right hemisphere 39.2
2647 Male, age 75, left hemisphere 38.7
2489 Female, age 72, unknown 37.6
Septal nuclei
nTPM: 40.9
2031 Female, age 72, unknown 41.5
2199 Male, age 80, right hemisphere 41.5
2629 Female, age 94, right hemisphere 41.5
2009 Female, age 91, both hemispheres 41.1
1960 Male, age 74, unknown 40.7
2394 Male, age 61, left hemisphere 40.7
2059 Female, age 85, both hemispheres 39.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.4
Samples: 246

Max nTPM: 59.4
Min nTPM: 24.8
Std nTPM: 5.6
Median nTPM: 36.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 52.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 52.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 49.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 49.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 49.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 48.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 47.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.0
Samples: 246

Max nTPM: 59.9
Min nTPM: 22.5
Std nTPM: 5.7
Median nTPM: 32.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 57.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 49.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 49.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 48.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 47.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 44.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 42.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.1
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 41.9
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Brain - Putamen (basal ganglia)
Average nTPM: 38.1
Samples: 205

Max nTPM: 58.3
Min nTPM: 25.4
Std nTPM: 6.4
Median nTPM: 37.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 58.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 57.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 57.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 53.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 53.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 52.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 51.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 51.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 51.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 50.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 50.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.9
FF:10164-103B2 76 years, female 85.9
Globus pallidus
Scaled Tags Per Million: 111.2
FF:10175-103C4 60 years, female 115.2
FF:10161-103A8 76 years, female 107.3
Nucleus accumbens
Scaled Tags Per Million: 132.3
FF:10037-101F1 23-56 years, mixed 132.3
Putamen
Scaled Tags Per Million: 95.5
FF:10176-103C5 60 years, female 95.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.3
Pig sample Sample description nTPM
Caudate
nTPM: 32.9
Samples: 4

Max nTPM: 33.3
Min nTPM: 32.0
Sample A Female 33.3
Sample B Female 33.1
Sample C Male 33.0
Sample D Male 32.0
Putamen
nTPM: 39.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 31.2
Sample A Female 38.5
Sample B Female 31.2
Sample C Male 51.6
Sample D Male 36.0
Septum
nTPM: 36.4
Samples: 4

Max nTPM: 39.4
Min nTPM: 33.2
Sample A Female 38.7
Sample B Female 34.4
Sample C Male 39.4
Sample D Male 33.2
Ventral pallidum
nTPM: 35.1
Samples: 4

Max nTPM: 38.6
Min nTPM: 31.9
Sample A Female 33.2
Sample B Female 36.7
Sample C Male 38.6
Sample D Male 31.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 91.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 86.0
Samples: 4

Max nTPM: 89.7
Min nTPM: 80.8
Sample A Male 89.7
Sample B Male 86.4
Sample C Female 80.8
Sample D Female 87.2
Septum
nTPM: 91.5
Samples: 4

Max nTPM: 97.7
Min nTPM: 86.7
Sample A Male 86.7
Sample B Male 90.4
Sample C Female 91.2
Sample D Female 97.7
Ventral forebrain
nTPM: 84.1
Samples: 4

Max nTPM: 89.5
Min nTPM: 78.9
Sample A Male 78.9
Sample B Male 89.5
Sample C Female 79.7
Sample D Female 88.1

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