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NBPF12
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.8 nTPM
HPA:8.8 nTPM
GTEx:10.3 nTPM
FANTOM5:3.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
2411 Female, age 72, unknown 10.5
1830 Male, age 51, unknown 9.7
2219 Male, age 76, both hemispheres 9.4
1833 Male, age 53, unknown 8.7
2019 Male, age 18, unknown 7.5
2828 Female, age 72, unknown 7.5
1870 Female, age 42, unknown 7.4
1827 Male, age 72, unknown 6.1
2666 Male, age 74, left hemisphere 5.2
2586 Male, age 75, left hemisphere 5.1
Dorsal raphe nucleus
nTPM: 6.9
2750 Male, age 76, both hemispheres 10.2
2016 Female, age 72, unknown 7.3
2047 Male, age 72, unknown 6.5
1828 Male, age 53, unknown 6.0
2298 Female, age 72, unknown 4.4
Inferior colliculus
nTPM: 6.8
2849 Male, age 72, unknown 8.3
1890 Male, age 53, unknown 7.3
1848 Female, age 42, unknown 6.9
2097 Female, age 72, unknown 4.8
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Pedunculopontine tegmental nucleus
nTPM: 7.9
2338 Male, age 61, both hemispheres 9.7
2334 Male, age 80, both hemispheres 7.3
1921 Female, age 85, both hemispheres 6.6
Periaquaductal grey, anterior
nTPM: 6.3
1947 Male, age 18, unknown 6.7
2502 Female, age 75, unknown 6.4
1795 Male, age 51, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 6.1
2464 Female, age 72, unknown 8.0
1831 Male, age 72, unknown 6.4
1840 Male, age 53, unknown 5.4
2850 Male, age 76, both hemispheres 4.6
Periaquaductal grey, lateral
nTPM: 6.4
2140 Male, age 76, both hemispheres 7.2
2272 Male, age 74, both hemispheres 6.9
2053 Male, age 18, unknown 5.1
Pretectal area
nTPM: 5.3
2407 Male, age 75, both hemispheres 8.1
2273 Male, age 74, both hemispheres 7.1
2316 Male, age 76, right hemisphere 6.8
2825 Male, age 18, unknown 6.8
2224 Female, age 72, unknown 6.2
2667 Female, age 75, unknown 5.1
1815 Male, age 53, unknown 4.4
1944 Female, age 72, unknown 4.3
2007 Male, age 72, unknown 3.7
1817 Female, age 42, unknown 3.1
1816 Male, age 51, unknown 2.8
Red nucleus
nTPM: 8.8
2588 Male, age 74, left hemisphere 11.9
2769 Male, age 72, unknown 10.8
2823 Male, age 76, right hemisphere 10.2
2227 Male, age 72, unknown 9.9
1865 Male, age 51, unknown 9.7
1904 Male, age 53, unknown 8.9
2785 Male, age 18, unknown 8.5
2503 Female, age 72, unknown 8.4
1954 Female, age 42, unknown 8.1
2584 Male, age 75, left hemisphere 8.1
2725 Female, age 75, unknown 5.6
1821 Female, age 72, unknown 4.8
Substantia nigra
nTPM: 6.6
2590 Female, age 75, unknown 10.3
2583 Male, age 75, right hemisphere 8.6
2409 Female, age 72, unknown 8.2
2699 Male, age 18, unknown 7.0
1941 Male, age 53, unknown 6.9
1851 Male, age 51, unknown 6.1
2241 Male, age 72, unknown 6.0
2665 Male, age 74, both hemispheres 4.7
1889 Female, age 72, unknown 4.3
1916 Female, age 42, unknown 4.1
Superior colliculus
nTPM: 5.9
1913 Female, age 42, unknown 8.3
1839 Male, age 51, unknown 6.9
2587 Male, age 74, left hemisphere 6.7
1796 Male, age 53, unknown 5.5
1895 Male, age 76, right hemisphere 5.4
2087 Female, age 72, unknown 5.4
2668 Female, age 75, unknown 5.4
1995 Male, age 72, unknown 5.3
2664 Male, age 75, both hemispheres 4.9
2261 Male, age 18, unknown 4.8
Ventral tegmental area
nTPM: 7.8
2223 Female, age 72, unknown 11.1
2021 Male, age 53, unknown 8.3
1942 Male, age 51, unknown 7.8
2410 Female, age 72, unknown 7.7
2218 Male, age 76, both hemispheres 6.3
1915 Female, age 42, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 26.2
Min nTPM: 3.9
Std nTPM: 3.4
Median nTPM: 9.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 17.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 17.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 16.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 15.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.6
FF:10158-103A5 76 years, female 3.6

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