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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:31.4 nTPM
FANTOM5:110.6 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:43.3 nTPM
Allen mouse:4.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043168
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Hippocampus
nTPM: 22.5
2621 Female, age 67, right hemisphere 50.1
1911 Female, age 85, right hemisphere 23.4
2529 Female, age 94, left hemisphere 17.8
1855 Male, age 76, left hemisphere 16.9
1898 Male, age 80, left hemisphere 15.2
2148 Female, age 91, left hemisphere 11.8
Dentate gyrus
nTPM: 15.1
2530 Female, age 94, left hemisphere 24.6
2010 Male, age 76, both hemispheres 17.2
2531 Female, age 67, both hemispheres 15.3
1927 Female, age 91, both hemispheres 13.9
2246 Female, age 85, both hemispheres 9.8
2528 Male, age 74, both hemispheres 9.7
Entorhinal gyrus
nTPM: 16.0
2613 Female, age 94, left hemisphere 35.3
1938 Female, age 85, left hemisphere 25.6
1787 Male, age 76, left hemisphere 13.5
2764 Male, age 80, right hemisphere 8.1
2117 Female, age 91, right hemisphere 6.8
2686 Male, age 75, right hemisphere 6.8
Hippocampus, CA1
nTPM: 21.9
2527 Male, age 74, both hemispheres 36.7
2749 Male, age 80, left hemisphere 35.5
1873 Female, age 85, both hemispheres 23.6
2082 Female, age 91, right hemisphere 10.8
2045 Male, age 76, both hemispheres 2.8
Hippocampus, CA2
nTPM: 16.5
1963 Male, age 80, left hemisphere 34.1
2249 Male, age 74, both hemispheres 20.9
1892 Male, age 76, both hemispheres 17.4
2437 Female, age 94, left hemisphere 14.3
2113 Female, age 91, right hemisphere 12.0
1940 Female, age 85, left hemisphere 0.5
Hippocampus, CA3
nTPM: 19.7
2137 Male, age 80, left hemisphere 31.6
2861 Female, age 67, both hemispheres 30.6
2436 Male, age 74, both hemispheres 21.5
1867 Male, age 76, both hemispheres 12.9
1891 Female, age 85, both hemispheres 12.6
2620 Female, age 94, left hemisphere 8.9
Parahippocampal cortex
nTPM: 10.3
2245 Female, age 91, both hemispheres 17.2
1933 Female, age 85, both hemispheres 14.9
2692 Male, age 74, both hemispheres 13.9
2250 Female, age 67, right hemisphere 11.8
2622 Female, age 67, right hemisphere 8.7
1990 Female, age 91, right hemisphere 8.6
1850 Male, age 80, both hemispheres 8.0
2018 Male, age 76, both hemispheres 7.6
2693 Female, age 94, both hemispheres 6.8
2532 Female, age 72, left hemisphere 5.9
Perirhinal gyrus
nTPM: 8.3
1847 Female, age 91, left hemisphere 26.0
1841 Female, age 85, right hemisphere 5.5
2848 Male, age 76, right hemisphere 4.3
2521 Female, age 94, right hemisphere 3.1
1794 Male, age 80, right hemisphere 2.7
Subiculum
nTPM: 10.0
1901 Male, age 80, both hemispheres 13.5
1977 Female, age 85, both hemispheres 12.1
2438 Female, age 94, left hemisphere 11.6
2042 Male, age 76, both hemispheres 8.8
2619 Male, age 74, both hemispheres 7.6
2729 Female, age 91, right hemisphere 6.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.4
Samples: 197

Max nTPM: 124.1
Min nTPM: 0.7
Std nTPM: 24.1
Median nTPM: 25.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 124.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 117.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 104.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 101.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 95.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 89.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 87.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 85.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 77.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 77.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 77.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 110.6
FF:10169-103B7 60 years, female 141.2
FF:10153-102I9 76 years, female 80.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.9
Samples: 4

Max nTPM: 9.6
Min nTPM: 2.9
Sample A Female 4.6
Sample B Female 9.6
Sample C Male 2.9
Sample D Male 6.6
Entorhinal cortex
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.2
Sample A Female 4.6
Sample B Female 4.0
Sample C Male 5.3
Sample D Male 3.2
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.4
Sample A Female 9.9
Sample B Female 10.4
Sample C Male 12.8
Sample D Male 9.4
Ventral hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 4.9
Sample A Female 15.5
Sample B Female 9.1
Sample C Male 23.4
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.8
Samples: 4

Max nTPM: 26.9
Min nTPM: 9.9
Sample A Male 15.3
Sample B Male 9.9
Sample C Female 26.9
Sample D Female 18.9
Hippocampal formation
nTPM: 43.3
Samples: 4

Max nTPM: 49.9
Min nTPM: 37.0
Sample A Male 37.3
Sample B Male 49.9
Sample C Female 48.9
Sample D Female 37.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.7
69627072 Antisense, RP_050428_01_G07, Mouse strain C57BL/6J (56 days, male) 6.0
72283810 Antisense, RP_051027_01_C05, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.