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ZNHIT3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:46.5 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:42.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2411 Female, age 72, unknown 34.7
1870 Female, age 42, unknown 34.6
2019 Male, age 18, unknown 33.9
1830 Male, age 51, unknown 32.6
1827 Male, age 72, unknown 32.4
1833 Male, age 53, unknown 32.1
2586 Male, age 75, left hemisphere 31.8
2828 Female, age 72, unknown 31.1
2219 Male, age 76, both hemispheres 30.9
2666 Male, age 74, left hemisphere 30.7
Dorsal raphe nucleus
nTPM: 33.1
2298 Female, age 72, unknown 35.1
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.7
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 33.5
1848 Female, age 42, unknown 33.0
1890 Male, age 53, unknown 32.3
2849 Male, age 72, unknown 32.1
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Pedunculopontine tegmental nucleus
nTPM: 32.3
1921 Female, age 85, both hemispheres 33.9
2338 Male, age 61, both hemispheres 31.5
2334 Male, age 80, both hemispheres 31.4
Periaquaductal grey, anterior
nTPM: 34.0
1947 Male, age 18, unknown 34.3
2502 Female, age 75, unknown 34.2
1795 Male, age 51, unknown 33.7
Periaquaductal grey, dorsal
nTPM: 32.2
1840 Male, age 53, unknown 33.1
1831 Male, age 72, unknown 32.0
2850 Male, age 76, both hemispheres 32.0
2464 Female, age 72, unknown 31.6
Periaquaductal grey, lateral
nTPM: 32.0
2053 Male, age 18, unknown 33.8
2272 Male, age 74, both hemispheres 31.8
2140 Male, age 76, both hemispheres 30.5
Pretectal area
nTPM: 33.3
1816 Male, age 51, unknown 34.9
1944 Female, age 72, unknown 34.9
2224 Female, age 72, unknown 34.0
2667 Female, age 75, unknown 34.0
1817 Female, age 42, unknown 33.9
2007 Male, age 72, unknown 33.7
1815 Male, age 53, unknown 32.9
2407 Male, age 75, both hemispheres 32.2
2316 Male, age 76, right hemisphere 32.1
2273 Male, age 74, both hemispheres 31.9
2825 Male, age 18, unknown 31.7
Red nucleus
nTPM: 32.4
1954 Female, age 42, unknown 33.7
1821 Female, age 72, unknown 33.2
1904 Male, age 53, unknown 33.0
2725 Female, age 75, unknown 33.0
2503 Female, age 72, unknown 32.9
2588 Male, age 74, left hemisphere 32.8
2823 Male, age 76, right hemisphere 32.5
2769 Male, age 72, unknown 32.2
2785 Male, age 18, unknown 32.0
1865 Male, age 51, unknown 31.5
2227 Male, age 72, unknown 31.1
2584 Male, age 75, left hemisphere 31.0
Substantia nigra
nTPM: 33.5
2241 Male, age 72, unknown 35.5
2409 Female, age 72, unknown 34.9
1851 Male, age 51, unknown 34.8
1916 Female, age 42, unknown 34.2
1889 Female, age 72, unknown 33.9
2583 Male, age 75, right hemisphere 33.9
1941 Male, age 53, unknown 32.0
2699 Male, age 18, unknown 32.0
2590 Female, age 75, unknown 31.9
2665 Male, age 74, both hemispheres 31.8
Superior colliculus
nTPM: 32.9
1895 Male, age 76, right hemisphere 33.7
2087 Female, age 72, unknown 33.7
1796 Male, age 53, unknown 33.6
2587 Male, age 74, left hemisphere 33.6
1995 Male, age 72, unknown 33.1
2668 Female, age 75, unknown 32.8
2261 Male, age 18, unknown 32.5
2664 Male, age 75, both hemispheres 32.4
1839 Male, age 51, unknown 32.0
1913 Female, age 42, unknown 31.2
Ventral tegmental area
nTPM: 32.7
2410 Female, age 72, unknown 33.3
2021 Male, age 53, unknown 33.0
2218 Male, age 76, both hemispheres 32.9
2223 Female, age 72, unknown 32.8
1915 Female, age 42, unknown 32.2
1942 Male, age 51, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 139

Max nTPM: 78.0
Min nTPM: 30.6
Std nTPM: 9.1
Median nTPM: 44.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 78.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 75.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 64.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 63.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 63.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.3
FF:10158-103A5 76 years, female 51.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 1.9
Sample C Male 1.9
Sample D Male 2.4
Periaqueductal gray
nTPM: 2.0
Samples: 3

Max nTPM: 2.2
Min nTPM: 1.8
Sample B Female 1.9
Sample C Male 2.2
Sample D Male 1.8
Substantia nigra
nTPM: 1.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.6
Sample A Female 1.9
Sample B Female 1.6
Sample C Male 2.3
Sample D Male 1.9
Superior colliculi
nTPM: 1.9
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 1.9
Sample C Male 2.1
Sample D Male 2.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 42.1
Sample A Male 42.8
Sample B Male 43.5
Sample C Female 42.1
Sample D Female 42.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.