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TAF9
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:40.9 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:101.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
2411 Female, age 72, unknown 36.4
2666 Male, age 74, left hemisphere 36.0
1827 Male, age 72, unknown 35.5
1870 Female, age 42, unknown 35.3
2019 Male, age 18, unknown 34.8
1833 Male, age 53, unknown 33.7
1830 Male, age 51, unknown 33.5
2828 Female, age 72, unknown 33.4
2219 Male, age 76, both hemispheres 31.7
2586 Male, age 75, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 35.5
2298 Female, age 72, unknown 38.4
2047 Male, age 72, unknown 37.6
2750 Male, age 76, both hemispheres 35.6
1828 Male, age 53, unknown 33.9
2016 Female, age 72, unknown 32.0
Inferior colliculus
nTPM: 34.6
2097 Female, age 72, unknown 36.9
1848 Female, age 42, unknown 34.3
2849 Male, age 72, unknown 33.9
1890 Male, age 53, unknown 33.4
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 35.3
2334 Male, age 80, both hemispheres 35.9
1921 Female, age 85, both hemispheres 35.3
2338 Male, age 61, both hemispheres 34.6
Periaquaductal grey, anterior
nTPM: 34.9
1947 Male, age 18, unknown 36.4
1795 Male, age 51, unknown 34.7
2502 Female, age 75, unknown 33.7
Periaquaductal grey, dorsal
nTPM: 33.3
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 33.6
1831 Male, age 72, unknown 33.5
2464 Female, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 32.8
2272 Male, age 74, both hemispheres 33.6
2053 Male, age 18, unknown 33.1
2140 Male, age 76, both hemispheres 31.8
Pretectal area
nTPM: 35.8
1944 Female, age 72, unknown 39.0
1816 Male, age 51, unknown 38.9
2667 Female, age 75, unknown 38.4
1817 Female, age 42, unknown 37.6
1815 Male, age 53, unknown 37.0
2007 Male, age 72, unknown 36.8
2224 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 33.7
2407 Male, age 75, both hemispheres 33.5
2273 Male, age 74, both hemispheres 33.1
2316 Male, age 76, right hemisphere 31.3
Red nucleus
nTPM: 33.5
1821 Female, age 72, unknown 36.0
2725 Female, age 75, unknown 34.9
2584 Male, age 75, left hemisphere 34.7
2823 Male, age 76, right hemisphere 33.6
1865 Male, age 51, unknown 33.5
2588 Male, age 74, left hemisphere 33.5
2503 Female, age 72, unknown 33.3
1904 Male, age 53, unknown 33.2
1954 Female, age 42, unknown 33.2
2769 Male, age 72, unknown 32.2
2785 Male, age 18, unknown 32.1
2227 Male, age 72, unknown 31.5
Substantia nigra
nTPM: 36.4
2241 Male, age 72, unknown 39.1
1889 Female, age 72, unknown 38.9
2409 Female, age 72, unknown 38.2
1941 Male, age 53, unknown 37.5
1916 Female, age 42, unknown 37.0
1851 Male, age 51, unknown 36.6
2665 Male, age 74, both hemispheres 36.0
2699 Male, age 18, unknown 34.2
2583 Male, age 75, right hemisphere 33.1
2590 Female, age 75, unknown 32.9
Superior colliculus
nTPM: 34.1
2261 Male, age 18, unknown 36.8
2087 Female, age 72, unknown 35.7
1796 Male, age 53, unknown 35.4
1895 Male, age 76, right hemisphere 34.7
2668 Female, age 75, unknown 34.5
2587 Male, age 74, left hemisphere 33.7
1839 Male, age 51, unknown 33.0
1913 Female, age 42, unknown 33.0
2664 Male, age 75, both hemispheres 32.5
1995 Male, age 72, unknown 31.6
Ventral tegmental area
nTPM: 34.8
2410 Female, age 72, unknown 37.2
1915 Female, age 42, unknown 35.8
2218 Male, age 76, both hemispheres 35.0
2223 Female, age 72, unknown 34.2
1942 Male, age 51, unknown 33.3
2021 Male, age 53, unknown 33.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 98.4
Min nTPM: 18.0
Std nTPM: 12.4
Median nTPM: 38.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 98.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 77.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 75.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 62.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 62.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 60.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.4
FF:10158-103A5 76 years, female 49.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.1
Pig sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 52.5
Min nTPM: 24.2
Sample A Female 24.2
Sample B Female 30.8
Sample C Male 52.5
Sample D Male 45.2
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 31.2
Min nTPM: 23.8
Sample B Female 23.8
Sample C Male 31.2
Sample D Male 26.5
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 44.7
Min nTPM: 20.4
Sample A Female 44.7
Sample B Female 27.2
Sample C Male 35.1
Sample D Male 20.4
Superior colliculi
nTPM: 40.1
Samples: 4

Max nTPM: 50.5
Min nTPM: 29.9
Sample A Female 42.3
Sample B Female 29.9
Sample C Male 50.5
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.4
Sample A Male 20.5
Sample B Male 16.5
Sample C Female 16.4
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
81654147 Antisense, RP_090303_01_A03, Mouse strain C57BL/6J (56 days, male) 4.6
68341890 Antisense, RP_041207_02_D05, Mouse strain C57BL/6J (56 days, male) 1.7
Midbrain
Expression energy: 4.6
81654147 Antisense, RP_090303_01_A03, Mouse strain C57BL/6J (56 days, male) 4.6
68341890 Antisense, RP_041207_02_D05, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.