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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:42.6 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:127.3 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA072658
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Hippocampus
nTPM: 34.4
1898 Male, age 80, left hemisphere 37.5
1855 Male, age 76, left hemisphere 36.1
2621 Female, age 67, right hemisphere 34.4
1911 Female, age 85, right hemisphere 33.3
2148 Female, age 91, left hemisphere 33.0
2529 Female, age 94, left hemisphere 32.4
Dentate gyrus
nTPM: 34.3
1927 Female, age 91, both hemispheres 37.7
2010 Male, age 76, both hemispheres 36.9
2246 Female, age 85, both hemispheres 34.1
2528 Male, age 74, both hemispheres 33.1
2530 Female, age 94, left hemisphere 32.4
2531 Female, age 67, both hemispheres 31.4
Entorhinal gyrus
nTPM: 34.7
2764 Male, age 80, right hemisphere 36.8
1787 Male, age 76, left hemisphere 36.6
1938 Female, age 85, left hemisphere 36.6
2686 Male, age 75, right hemisphere 33.2
2613 Female, age 94, left hemisphere 32.8
2117 Female, age 91, right hemisphere 32.3
Hippocampus, CA1
nTPM: 36.2
2749 Male, age 80, left hemisphere 41.7
2527 Male, age 74, both hemispheres 36.5
1873 Female, age 85, both hemispheres 35.5
2045 Male, age 76, both hemispheres 34.1
2082 Female, age 91, right hemisphere 33.2
Hippocampus, CA2
nTPM: 34.9
1892 Male, age 76, both hemispheres 39.5
1963 Male, age 80, left hemisphere 36.2
2249 Male, age 74, both hemispheres 35.9
2437 Female, age 94, left hemisphere 33.1
1940 Female, age 85, left hemisphere 32.5
2113 Female, age 91, right hemisphere 32.4
Hippocampus, CA3
nTPM: 35.3
1867 Male, age 76, both hemispheres 38.4
2137 Male, age 80, left hemisphere 36.9
1891 Female, age 85, both hemispheres 34.5
2436 Male, age 74, both hemispheres 34.4
2620 Female, age 94, left hemisphere 34.2
2861 Female, age 67, both hemispheres 33.2
Parahippocampal cortex
nTPM: 35.4
1850 Male, age 80, both hemispheres 40.0
1990 Female, age 91, right hemisphere 37.0
2532 Female, age 72, left hemisphere 36.4
2693 Female, age 94, both hemispheres 36.0
2018 Male, age 76, both hemispheres 35.4
2250 Female, age 67, right hemisphere 35.1
1933 Female, age 85, both hemispheres 34.8
2245 Female, age 91, both hemispheres 34.8
2622 Female, age 67, right hemisphere 33.2
2692 Male, age 74, both hemispheres 31.2
Perirhinal gyrus
nTPM: 39.2
1847 Female, age 91, left hemisphere 41.9
1841 Female, age 85, right hemisphere 41.4
1794 Male, age 80, right hemisphere 40.1
2848 Male, age 76, right hemisphere 36.6
2521 Female, age 94, right hemisphere 36.0
Subiculum
nTPM: 34.5
1977 Female, age 85, both hemispheres 36.5
2438 Female, age 94, left hemisphere 34.9
1901 Male, age 80, both hemispheres 34.8
2042 Male, age 76, both hemispheres 34.5
2619 Male, age 74, both hemispheres 33.7
2729 Female, age 91, right hemisphere 32.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.6
Samples: 197

Max nTPM: 101.7
Min nTPM: 17.6
Std nTPM: 14.5
Median nTPM: 41.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 101.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 83.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 77.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 77.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 72.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 72.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 70.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 69.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 69.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 68.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 67.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.1
FF:10169-103B7 60 years, female 57.5
FF:10153-102I9 76 years, female 44.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 58.2
Samples: 4

Max nTPM: 80.0
Min nTPM: 44.4
Sample A Female 80.0
Sample B Female 61.1
Sample C Male 47.4
Sample D Male 44.4
Entorhinal cortex
nTPM: 47.9
Samples: 4

Max nTPM: 54.8
Min nTPM: 39.2
Sample A Female 54.8
Sample B Female 53.9
Sample C Male 43.6
Sample D Male 39.2
Subiculum
nTPM: 45.8
Samples: 4

Max nTPM: 56.7
Min nTPM: 37.4
Sample A Female 56.7
Sample B Female 41.7
Sample C Male 37.4
Sample D Male 47.3
Ventral hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 36.2
Sample A Female 57.0
Sample B Female 36.2
Sample C Male 40.2
Sample D Male 55.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 127.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.6
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.9
Sample A Male 21.9
Sample B Male 22.8
Sample C Female 24.2
Sample D Female 25.3
Hippocampal formation
nTPM: 22.6
Samples: 4

Max nTPM: 28.1
Min nTPM: 18.0
Sample A Male 28.1
Sample B Male 22.9
Sample C Female 18.0
Sample D Female 21.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
81654147 Antisense, RP_090303_01_A03, Mouse strain C57BL/6J (56 days, male) 8.9
68341890 Antisense, RP_041207_02_D05, Mouse strain C57BL/6J (56 days, male) 4.1
Hippocampal formation
Expression energy: 8.9
81654147 Antisense, RP_090303_01_A03, Mouse strain C57BL/6J (56 days, male) 8.9
68341890 Antisense, RP_041207_02_D05, Mouse strain C57BL/6J (56 days, male) 4.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.