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SIK1B
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:9.1 nTPM
FANTOM5:1.7 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA038211
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.0
1781 Male, age 74, unknown 13.6
2290 Female, age 72, unknown 4.7
2481 Female, age 94, left hemisphere 4.4
1854 Male, age 80, left hemisphere 4.1
1857 Female, age 85, left hemisphere 3.8
2846 Female, age 79, unknown 3.4
2289 Male, age 61, right hemisphere 3.1
2288 Male, age 75, left hemisphere 2.8
Claustrum
nTPM: 4.6
2196 Female, age 79, unknown 7.4
2645 Female, age 72, unknown 5.8
2292 Female, age 85, both hemispheres 4.9
2198 Male, age 80, both hemispheres 4.5
2284 Female, age 91, both hemispheres 4.4
2392 Female, age 94, both hemispheres 4.0
1956 Male, age 74, unknown 3.8
2491 Male, age 75, both hemispheres 3.8
2568 Male, age 61, both hemispheres 3.2
Globus pallidus, externus
nTPM: 5.1
2646 Male, age 61, right hemisphere 7.2
1996 Male, age 80, right hemisphere 4.9
2567 Female, age 72, unknown 4.9
2395 Male, age 75, both hemispheres 4.4
2772 Female, age 79, unknown 4.0
Globus pallidus, internus
nTPM: 4.6
2037 Male, age 80, right hemisphere 5.7
2287 Male, age 75, right hemisphere 5.1
2778 Female, age 91, both hemispheres 4.9
2566 Female, age 72, unknown 4.7
2483 Female, age 94, right hemisphere 4.3
2111 Female, age 85, right hemisphere 4.1
1818 Male, age 74, unknown 3.3
Nucleus accumbens
nTPM: 4.0
2732 Male, age 80, right hemisphere 7.0
1783 Male, age 74, unknown 4.6
2698 Female, age 72, unknown 4.0
1806 Female, age 85, left hemisphere 3.6
1856 Female, age 91, right hemisphere 3.6
2286 Male, age 75, left hemisphere 3.4
2391 Female, age 94, left hemisphere 3.4
2824 Male, age 61, right hemisphere 2.1
Nucleus basalis of Meynert
nTPM: 5.6
2569 Male, age 61, both hemispheres 9.4
2484 Female, age 94, left hemisphere 5.1
2821 Male, age 75, both hemispheres 4.3
2393 Male, age 80, right hemisphere 3.4
Nucleus of the diagonal band
nTPM: 4.7
1979 Male, age 74, unknown 6.5
1812 Female, age 91, both hemispheres 5.2
2195 Female, age 85, both hemispheres 4.3
2029 Male, age 61, right hemisphere 3.8
2775 Male, age 80, right hemisphere 3.7
Olfactory tubercle
nTPM: 3.9
1998 Female, age 91, both hemispheres 4.3
2856 Male, age 75, right hemisphere 4.3
2487 Female, age 94, left hemisphere 3.9
1846 Male, age 80, right hemisphere 3.1
Putamen
nTPM: 4.0
2647 Male, age 75, left hemisphere 6.1
2489 Female, age 72, unknown 4.7
2482 Female, age 94, left hemisphere 4.1
1838 Male, age 80, right hemisphere 3.9
1937 Female, age 91, right hemisphere 3.5
2466 Female, age 79, unknown 3.0
1829 Male, age 74, unknown 2.9
Septal nuclei
nTPM: 5.3
1960 Male, age 74, unknown 6.0
2009 Female, age 91, both hemispheres 6.0
2199 Male, age 80, right hemisphere 6.0
2394 Male, age 61, left hemisphere 5.6
2031 Female, age 72, unknown 5.4
2059 Female, age 85, both hemispheres 4.4
2629 Female, age 94, right hemisphere 3.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 56.9
Min nTPM: 0.0
Std nTPM: 9.3
Median nTPM: 6.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 56.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 53.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 45.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 42.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 39.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 39.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 35.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 30.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 30.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 88.6
Min nTPM: 0.0
Std nTPM: 9.0
Median nTPM: 4.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 88.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 53.9
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 42.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 30.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 28.9
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 27.5
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 25.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 25.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 24.8
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 24.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 23.8
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Brain - Putamen (basal ganglia)
Average nTPM: 8.5
Samples: 205

Max nTPM: 47.5
Min nTPM: 0.1
Std nTPM: 8.6
Median nTPM: 5.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 47.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 47.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 45.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 33.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 33.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 32.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 30.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 30.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 27.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 26.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 25.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.7
FF:10164-103B2 76 years, female 1.7
Globus pallidus
Scaled Tags Per Million: 1.6
FF:10161-103A8 76 years, female 1.8
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 0.5
FF:10037-101F1 23-56 years, mixed 0.5
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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