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SRCIN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:50.8 nTPM
FANTOM5:59.1 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:32.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.8
2586 Male, age 75, left hemisphere 31.6
1830 Male, age 51, unknown 27.4
2219 Male, age 76, both hemispheres 24.2
2019 Male, age 18, unknown 23.8
2411 Female, age 72, unknown 22.5
1833 Male, age 53, unknown 21.9
2666 Male, age 74, left hemisphere 19.4
2828 Female, age 72, unknown 18.2
1870 Female, age 42, unknown 17.3
1827 Male, age 72, unknown 11.9
Dorsal raphe nucleus
nTPM: 10.3
2750 Male, age 76, both hemispheres 27.5
2016 Female, age 72, unknown 11.9
1828 Male, age 53, unknown 7.6
2047 Male, age 72, unknown 4.7
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 7.4
2849 Male, age 72, unknown 13.3
1890 Male, age 53, unknown 8.7
1848 Female, age 42, unknown 7.5
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Pedunculopontine tegmental nucleus
nTPM: 12.8
2334 Male, age 80, both hemispheres 17.3
1921 Female, age 85, both hemispheres 12.8
2338 Male, age 61, both hemispheres 8.3
Periaquaductal grey, anterior
nTPM: 12.8
1947 Male, age 18, unknown 19.6
2502 Female, age 75, unknown 11.0
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 3.7
2464 Female, age 72, unknown 10.4
1831 Male, age 72, unknown 4.5
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 8.3
2272 Male, age 74, both hemispheres 14.7
2053 Male, age 18, unknown 9.0
2140 Male, age 76, both hemispheres 1.1
Pretectal area
nTPM: 9.1
2316 Male, age 76, right hemisphere 25.4
2407 Male, age 75, both hemispheres 23.9
1815 Male, age 53, unknown 13.3
2007 Male, age 72, unknown 10.2
2825 Male, age 18, unknown 9.3
1817 Female, age 42, unknown 4.6
2224 Female, age 72, unknown 4.3
2273 Male, age 74, both hemispheres 4.1
1944 Female, age 72, unknown 3.7
1816 Male, age 51, unknown 1.1
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 28.8
2823 Male, age 76, right hemisphere 39.8
2769 Male, age 72, unknown 37.4
2584 Male, age 75, left hemisphere 37.1
2588 Male, age 74, left hemisphere 36.4
2227 Male, age 72, unknown 35.9
1904 Male, age 53, unknown 31.1
1865 Male, age 51, unknown 29.6
2503 Female, age 72, unknown 26.3
2785 Male, age 18, unknown 23.1
2725 Female, age 75, unknown 20.5
1954 Female, age 42, unknown 16.3
1821 Female, age 72, unknown 12.4
Substantia nigra
nTPM: 11.8
2583 Male, age 75, right hemisphere 30.9
2590 Female, age 75, unknown 22.2
1851 Male, age 51, unknown 14.2
1941 Male, age 53, unknown 12.7
2699 Male, age 18, unknown 9.8
2409 Female, age 72, unknown 8.3
1889 Female, age 72, unknown 6.9
1916 Female, age 42, unknown 6.8
2665 Male, age 74, both hemispheres 6.7
2241 Male, age 72, unknown 0.0
Superior colliculus
nTPM: 17.0
1913 Female, age 42, unknown 30.0
2668 Female, age 75, unknown 26.6
1995 Male, age 72, unknown 25.6
1839 Male, age 51, unknown 19.9
2587 Male, age 74, left hemisphere 17.1
1895 Male, age 76, right hemisphere 15.9
1796 Male, age 53, unknown 12.3
2664 Male, age 75, both hemispheres 11.1
2261 Male, age 18, unknown 8.8
2087 Female, age 72, unknown 2.9
Ventral tegmental area
nTPM: 15.1
2223 Female, age 72, unknown 19.9
2410 Female, age 72, unknown 17.9
1942 Male, age 51, unknown 16.9
2218 Male, age 76, both hemispheres 13.5
2021 Male, age 53, unknown 13.0
1915 Female, age 42, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.8
Samples: 139

Max nTPM: 211.9
Min nTPM: 9.4
Std nTPM: 29.0
Median nTPM: 44.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 211.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 181.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 176.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 108.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 100.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 100.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 86.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 85.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.1
FF:10158-103A5 76 years, female 59.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.2
Pig sample Sample description nTPM
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 64.3
Min nTPM: 44.7
Sample A Female 64.3
Sample B Female 44.7
Sample C Male 55.5
Sample D Male 52.1
Periaqueductal gray
nTPM: 39.4
Samples: 3

Max nTPM: 40.6
Min nTPM: 38.1
Sample B Female 40.6
Sample C Male 38.1
Sample D Male 39.5
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 70.4
Min nTPM: 31.7
Sample A Female 50.4
Sample B Female 31.7
Sample C Male 61.1
Sample D Male 70.4
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 64.8
Min nTPM: 21.0
Sample A Female 44.1
Sample B Female 21.0
Sample C Male 54.9
Sample D Male 64.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.2
Sample A Male 32.7
Sample B Male 30.2
Sample C Female 33.8
Sample D Female 32.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.