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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:90.6 nTPM
HPA:90.6 nTPM
GTEx:38.4 nTPM
FANTOM5:83.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA003243Antibody HPA003445
Glial cells Not detectedHigh
Neuronal cells -High





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 90.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 70.8
2288 Male, age 75, left hemisphere 80.6
2289 Male, age 61, right hemisphere 77.1
1781 Male, age 74, unknown 75.6
2846 Female, age 79, unknown 70.9
2290 Female, age 72, unknown 69.6
1854 Male, age 80, left hemisphere 65.9
2481 Female, age 94, left hemisphere 64.2
1857 Female, age 85, left hemisphere 62.8
Claustrum
nTPM: 87.1
2292 Female, age 85, both hemispheres 104.1
1956 Male, age 74, unknown 88.2
2568 Male, age 61, both hemispheres 87.0
2284 Female, age 91, both hemispheres 85.6
2196 Female, age 79, unknown 85.5
2645 Female, age 72, unknown 85.1
2491 Male, age 75, both hemispheres 84.8
2198 Male, age 80, both hemispheres 84.2
2392 Female, age 94, both hemispheres 79.2
Globus pallidus, externus
nTPM: 87.8
2567 Female, age 72, unknown 101.6
2772 Female, age 79, unknown 86.6
2395 Male, age 75, both hemispheres 84.8
1996 Male, age 80, right hemisphere 83.1
2646 Male, age 61, right hemisphere 82.8
Globus pallidus, internus
nTPM: 90.6
2111 Female, age 85, right hemisphere 111.9
2287 Male, age 75, right hemisphere 106.1
2566 Female, age 72, unknown 97.8
2778 Female, age 91, both hemispheres 95.6
2037 Male, age 80, right hemisphere 78.2
1818 Male, age 74, unknown 77.0
2483 Female, age 94, right hemisphere 67.5
Nucleus accumbens
nTPM: 71.4
2286 Male, age 75, left hemisphere 77.7
2698 Female, age 72, unknown 75.7
2824 Male, age 61, right hemisphere 75.4
2732 Male, age 80, right hemisphere 73.6
2391 Female, age 94, left hemisphere 71.0
1783 Male, age 74, unknown 68.3
1806 Female, age 85, left hemisphere 66.1
1856 Female, age 91, right hemisphere 63.4
Nucleus basalis of Meynert
nTPM: 72.4
2569 Male, age 61, both hemispheres 79.2
2821 Male, age 75, both hemispheres 76.8
2484 Female, age 94, left hemisphere 68.1
2393 Male, age 80, right hemisphere 65.6
Nucleus of the diagonal band
nTPM: 78.1
2029 Male, age 61, right hemisphere 86.4
2195 Female, age 85, both hemispheres 81.2
2775 Male, age 80, right hemisphere 78.2
1812 Female, age 91, both hemispheres 74.8
1979 Male, age 74, unknown 69.8
Olfactory tubercle
nTPM: 77.9
2487 Female, age 94, left hemisphere 87.7
2856 Male, age 75, right hemisphere 78.4
1846 Male, age 80, right hemisphere 73.2
1998 Female, age 91, both hemispheres 72.4
Putamen
nTPM: 71.2
2647 Male, age 75, left hemisphere 81.1
2489 Female, age 72, unknown 72.2
1829 Male, age 74, unknown 70.8
1937 Female, age 91, right hemisphere 69.8
2466 Female, age 79, unknown 69.6
1838 Male, age 80, right hemisphere 67.6
2482 Female, age 94, left hemisphere 67.4
Septal nuclei
nTPM: 78.3
1960 Male, age 74, unknown 96.1
2629 Female, age 94, right hemisphere 84.4
2394 Male, age 61, left hemisphere 78.5
2059 Female, age 85, both hemispheres 76.3
2031 Female, age 72, unknown 74.9
2009 Female, age 91, both hemispheres 71.2
2199 Male, age 80, right hemisphere 66.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 99.9
Min nTPM: 4.1
Std nTPM: 16.4
Median nTPM: 27.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 99.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 82.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 81.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 77.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 69.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 68.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 68.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 62.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 121.5
Min nTPM: 2.3
Std nTPM: 19.7
Median nTPM: 19.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 121.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 109.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 105.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 82.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 82.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 74.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 70.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 69.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 64.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 64.2
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Brain - Putamen (basal ganglia)
Average nTPM: 38.4
Samples: 205

Max nTPM: 108.2
Min nTPM: 4.5
Std nTPM: 18.7
Median nTPM: 36.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 108.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 103.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 95.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 89.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 88.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 80.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 80.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 72.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 72.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 72.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 71.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Globus pallidus
Scaled Tags Per Million: 78.0
FF:10161-103A8 76 years, female 86.5
FF:10175-103C4 60 years, female 69.4
Nucleus accumbens
Scaled Tags Per Million: 83.1
FF:10037-101F1 23-56 years, mixed 83.1
Putamen
Scaled Tags Per Million: 36.4
FF:10176-103C5 60 years, female 36.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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