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COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Low
Glandular cells: Medium
Peripheral nerve/ganglion: Low
RNA expressioni
Consensus:37.6 nTPM
HPA:22.4 nTPM
GTEx:37.6 nTPM
FANTOM5:19.8 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA005558Antibody CAB025337
Endothelial cells -Low
Glandular cells MediumMedium
Peripheral nerve/ganglion -Low


COLON - HPA RNA-seqi
Average nTPM 22.4
overview Male, age 54 Colon sample 67
nTPM: 24.5
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview Female, age 57 Colon sample 68
nTPM: 22.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview Male, age 80 Colon sample 69
nTPM: 28.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview Male, age 68 Colon sample 70
nTPM: 23.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview Female, age 68 Colon sample 76
nTPM: 24.2
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview Female, age 61 Colon sample 299
nTPM: 21.3
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview Male, age 80 Colon sample 300
nTPM: 19.5
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview Female, age 78 Colon sample 368
nTPM: 20.5
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview Male, age 84 Colon sample 381
nTPM: 18.3
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview Male, age 80 Colon sample 384
nTPM: 26.3
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview Female, age 78 Colon sample 389
nTPM: 18.3
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview Female, age 69 Colon sample 391
nTPM: 22.1
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview Female, age 72 Colon sample 403
nTPM: 21.4
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 37.6
Samples: 373

Max nTPM: 76.8
Min nTPM: 11.9
Std nTPM: 7.9
Median nTPM: 37.1
GTEX-15RJ7-1726-SM-6PAL3 40-49 years, male 76.8
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 60.2
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 59.5
GTEX-1L5NE-1926-SM-D3L9R 50-59 years, male 58.2
GTEX-1LSNM-1426-SM-E6CIH 50-59 years, male 56.7
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 56.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 55.9
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 55.9
GTEX-16MTA-1626-SM-6M47N 50-59 years, male 55.6
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 54.1
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 52.8
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Colon - Transverse
Average nTPM: 33.1
Samples: 406

Max nTPM: 52.2
Min nTPM: 15.1
Std nTPM: 5.8
Median nTPM: 32.5
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 52.2
GTEX-15G1A-1826-SM-7KUKO 30-39 years, male 51.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 50.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 49.4
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 49.3
GTEX-OOBJ-1426-SM-E6CHH 60-69 years, male 48.6
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 46.8
GTEX-1AMFI-1726-SM-7189L 50-59 years, female 46.8
GTEX-14XAO-2026-SM-69LOI 60-69 years, female 46.3
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 46.1
GTEX-14E1K-1826-SM-793DT 50-59 years, male 45.9
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 19.8
FF:10014-101C5 62,83,84 years, mixed 19.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.