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LASP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.5 nTPM
HPA:63.5 nTPM
GTEx:37.9 nTPM
FANTOM5:75.9 Scaled Tags Per Million
Pig:48.5 nTPM
Mouse:58.2 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.3
2666 Male, age 74, left hemisphere 71.7
2828 Female, age 72, unknown 67.7
2586 Male, age 75, left hemisphere 66.0
1827 Male, age 72, unknown 63.1
2219 Male, age 76, both hemispheres 59.2
1870 Female, age 42, unknown 53.0
1833 Male, age 53, unknown 52.2
2411 Female, age 72, unknown 51.7
2019 Male, age 18, unknown 50.1
1830 Male, age 51, unknown 47.8
Dorsal raphe nucleus
nTPM: 56.7
2047 Male, age 72, unknown 62.1
2298 Female, age 72, unknown 58.0
1828 Male, age 53, unknown 55.4
2016 Female, age 72, unknown 54.1
2750 Male, age 76, both hemispheres 53.9
Inferior colliculus
nTPM: 52.7
2849 Male, age 72, unknown 54.2
2097 Female, age 72, unknown 52.5
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 51.8
Median raphe nucleus
nTPM: 56.5
2220 Male, age 76, midline 56.5
Pedunculopontine tegmental nucleus
nTPM: 52.0
2338 Male, age 61, both hemispheres 54.0
1921 Female, age 85, both hemispheres 52.7
2334 Male, age 80, both hemispheres 49.5
Periaquaductal grey, anterior
nTPM: 61.4
1795 Male, age 51, unknown 66.2
1947 Male, age 18, unknown 61.6
2502 Female, age 75, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 56.6
1840 Male, age 53, unknown 63.9
1831 Male, age 72, unknown 57.2
2464 Female, age 72, unknown 54.8
2850 Male, age 76, both hemispheres 50.6
Periaquaductal grey, lateral
nTPM: 51.9
2053 Male, age 18, unknown 58.4
2140 Male, age 76, both hemispheres 51.0
2272 Male, age 74, both hemispheres 46.3
Pretectal area
nTPM: 59.3
1816 Male, age 51, unknown 76.0
1944 Female, age 72, unknown 70.3
1815 Male, age 53, unknown 65.3
1817 Female, age 42, unknown 64.4
2825 Male, age 18, unknown 58.6
2407 Male, age 75, both hemispheres 58.0
2007 Male, age 72, unknown 57.5
2667 Female, age 75, unknown 55.6
2224 Female, age 72, unknown 52.6
2316 Male, age 76, right hemisphere 48.7
2273 Male, age 74, both hemispheres 45.4
Red nucleus
nTPM: 49.8
2725 Female, age 75, unknown 59.1
2584 Male, age 75, left hemisphere 58.2
2588 Male, age 74, left hemisphere 52.2
1821 Female, age 72, unknown 50.2
1954 Female, age 42, unknown 49.1
2823 Male, age 76, right hemisphere 48.8
2503 Female, age 72, unknown 48.6
2785 Male, age 18, unknown 48.3
2769 Male, age 72, unknown 46.7
2227 Male, age 72, unknown 46.4
1904 Male, age 53, unknown 45.9
1865 Male, age 51, unknown 44.1
Substantia nigra
nTPM: 63.5
1916 Female, age 42, unknown 74.7
2665 Male, age 74, both hemispheres 70.7
2583 Male, age 75, right hemisphere 65.2
1851 Male, age 51, unknown 64.8
2241 Male, age 72, unknown 64.0
2590 Female, age 75, unknown 61.2
2699 Male, age 18, unknown 60.6
1889 Female, age 72, unknown 58.6
2409 Female, age 72, unknown 57.7
1941 Male, age 53, unknown 57.0
Superior colliculus
nTPM: 58.6
2664 Male, age 75, both hemispheres 69.9
2087 Female, age 72, unknown 66.2
1796 Male, age 53, unknown 64.0
2261 Male, age 18, unknown 62.6
2668 Female, age 75, unknown 57.2
2587 Male, age 74, left hemisphere 55.1
1839 Male, age 51, unknown 54.8
1913 Female, age 42, unknown 53.3
1995 Male, age 72, unknown 53.2
1895 Male, age 76, right hemisphere 49.9
Ventral tegmental area
nTPM: 58.1
2218 Male, age 76, both hemispheres 62.0
2410 Female, age 72, unknown 61.8
1915 Female, age 42, unknown 60.1
1942 Male, age 51, unknown 59.5
2021 Male, age 53, unknown 57.6
2223 Female, age 72, unknown 47.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.9
Samples: 139

Max nTPM: 57.4
Min nTPM: 16.6
Std nTPM: 9.2
Median nTPM: 38.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 57.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 56.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 56.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 56.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 54.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 54.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 53.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 53.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.9
FF:10158-103A5 76 years, female 75.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.5
Pig sample Sample description nTPM
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 56.6
Min nTPM: 40.9
Sample A Female 45.6
Sample B Female 40.9
Sample C Male 56.6
Sample D Male 50.9
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 49.8
Min nTPM: 35.7
Sample B Female 39.6
Sample C Male 49.8
Sample D Male 35.7
Substantia nigra
nTPM: 46.3
Samples: 4

Max nTPM: 53.7
Min nTPM: 36.6
Sample A Female 53.7
Sample B Female 42.6
Sample C Male 52.3
Sample D Male 36.6
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 50.0
Min nTPM: 41.6
Sample A Female 50.0
Sample B Female 44.9
Sample C Male 41.6
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 59.7
Min nTPM: 55.1
Sample A Male 55.1
Sample B Male 59.7
Sample C Female 59.4
Sample D Female 58.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
512991 Antisense, RP_040809_02_F09, Mouse strain C57BL/6J (56 days, male) 10.8
81599648 Antisense, RP_071212_04_F09, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.