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FBXL3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:16.5 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:53.7 nTPM
Allen mouse:7.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.2
2481 Female, age 94, left hemisphere 19.6
2288 Male, age 75, left hemisphere 18.7
2846 Female, age 79, unknown 18.0
1857 Female, age 85, left hemisphere 17.6
1854 Male, age 80, left hemisphere 16.8
2290 Female, age 72, unknown 16.2
1781 Male, age 74, unknown 15.6
2289 Male, age 61, right hemisphere 14.8
Claustrum
nTPM: 16.6
1956 Male, age 74, unknown 20.4
2392 Female, age 94, both hemispheres 19.1
2196 Female, age 79, unknown 16.8
2198 Male, age 80, both hemispheres 16.4
2292 Female, age 85, both hemispheres 16.1
2568 Male, age 61, both hemispheres 16.1
2491 Male, age 75, both hemispheres 15.3
2284 Female, age 91, both hemispheres 15.1
2645 Female, age 72, unknown 13.7
Globus pallidus, externus
nTPM: 18.6
1996 Male, age 80, right hemisphere 22.2
2772 Female, age 79, unknown 20.8
2395 Male, age 75, both hemispheres 18.3
2646 Male, age 61, right hemisphere 17.4
2567 Female, age 72, unknown 14.4
Globus pallidus, internus
nTPM: 20.4
2287 Male, age 75, right hemisphere 24.0
2778 Female, age 91, both hemispheres 22.7
2111 Female, age 85, right hemisphere 21.3
1818 Male, age 74, unknown 20.2
2483 Female, age 94, right hemisphere 19.8
2037 Male, age 80, right hemisphere 19.1
2566 Female, age 72, unknown 15.6
Nucleus accumbens
nTPM: 17.7
2286 Male, age 75, left hemisphere 20.5
2391 Female, age 94, left hemisphere 20.1
2698 Female, age 72, unknown 18.2
1806 Female, age 85, left hemisphere 17.4
2824 Male, age 61, right hemisphere 17.3
1783 Male, age 74, unknown 16.2
1856 Female, age 91, right hemisphere 16.2
2732 Male, age 80, right hemisphere 15.7
Nucleus basalis of Meynert
nTPM: 15.6
2821 Male, age 75, both hemispheres 16.1
2484 Female, age 94, left hemisphere 15.7
2569 Male, age 61, both hemispheres 15.5
2393 Male, age 80, right hemisphere 15.1
Nucleus of the diagonal band
nTPM: 16.7
2029 Male, age 61, right hemisphere 18.8
1812 Female, age 91, both hemispheres 18.1
2775 Male, age 80, right hemisphere 16.8
2195 Female, age 85, both hemispheres 15.5
1979 Male, age 74, unknown 14.2
Olfactory tubercle
nTPM: 16.6
1846 Male, age 80, right hemisphere 18.1
2856 Male, age 75, right hemisphere 17.5
2487 Female, age 94, left hemisphere 15.5
1998 Female, age 91, both hemispheres 15.4
Putamen
nTPM: 16.1
2482 Female, age 94, left hemisphere 19.2
1937 Female, age 91, right hemisphere 16.7
1829 Male, age 74, unknown 16.5
1838 Male, age 80, right hemisphere 16.3
2647 Male, age 75, left hemisphere 15.6
2466 Female, age 79, unknown 15.2
2489 Female, age 72, unknown 13.2
Septal nuclei
nTPM: 16.1
2031 Female, age 72, unknown 19.1
2394 Male, age 61, left hemisphere 17.3
1960 Male, age 74, unknown 16.0
2629 Female, age 94, right hemisphere 15.7
2009 Female, age 91, both hemispheres 15.5
2059 Female, age 85, both hemispheres 14.8
2199 Male, age 80, right hemisphere 14.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.5
Samples: 246

Max nTPM: 30.0
Min nTPM: 9.4
Std nTPM: 2.9
Median nTPM: 16.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 30.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 25.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 24.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 24.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 24.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 23.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 23.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 22.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 22.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.6
Samples: 246

Max nTPM: 28.7
Min nTPM: 7.6
Std nTPM: 3.1
Median nTPM: 15.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 28.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 27.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 26.4
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 25.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 25.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 23.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 23.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 23.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 22.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 22.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 21.4
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Brain - Putamen (basal ganglia)
Average nTPM: 16.2
Samples: 205

Max nTPM: 26.1
Min nTPM: 9.2
Std nTPM: 3.0
Median nTPM: 15.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 26.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 26.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 23.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 23.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 23.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 22.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 22.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 22.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 21.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 21.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.7
FF:10164-103B2 76 years, female 85.7
Globus pallidus
Scaled Tags Per Million: 72.8
FF:10161-103A8 76 years, female 80.2
FF:10175-103C4 60 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 54.8
FF:10037-101F1 23-56 years, mixed 54.8
Putamen
Scaled Tags Per Million: 63.2
FF:10176-103C5 60 years, female 63.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Caudate
nTPM: 19.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 17.7
Sample A Female 21.2
Sample B Female 17.7
Sample C Male 19.8
Sample D Male 19.7
Putamen
nTPM: 25.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 18.7
Sample A Female 26.8
Sample B Female 18.7
Sample C Male 32.3
Sample D Male 22.9
Septum
nTPM: 23.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 20.1
Sample A Female 26.3
Sample B Female 20.1
Sample C Male 24.7
Sample D Male 20.8
Ventral pallidum
nTPM: 22.0
Samples: 4

Max nTPM: 23.7
Min nTPM: 19.2
Sample A Female 23.7
Sample B Female 19.2
Sample C Male 22.8
Sample D Male 22.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.7
Samples: 4

Max nTPM: 56.4
Min nTPM: 52.3
Sample A Male 53.1
Sample B Male 52.8
Sample C Female 56.4
Sample D Female 52.3
Septum
nTPM: 43.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.6
Sample A Male 38.6
Sample B Male 46.7
Sample C Female 44.7
Sample D Female 45.5
Ventral forebrain
nTPM: 46.0
Samples: 4

Max nTPM: 51.0
Min nTPM: 41.3
Sample A Male 50.3
Sample B Male 41.5
Sample C Female 41.3
Sample D Female 51.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.7
77465054 Antisense, RP_070129_03_A10, Mouse strain C57BL/6J (56 days, male) 7.7
Pallidum
Expression energy: 4.6
77465054 Antisense, RP_070129_03_A10, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.