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PAFAH1B1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:55.4 nTPM
FANTOM5:152.2 Scaled Tags Per Million
Pig:139.9 nTPM
Mouse:204.9 nTPM
Allen mouse:10.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020036Antibody CAB004489
Glial cells MediumMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Hippocampus
nTPM: 29.8
1898 Male, age 80, left hemisphere 53.2
1855 Male, age 76, left hemisphere 36.2
2621 Female, age 67, right hemisphere 26.1
2529 Female, age 94, left hemisphere 25.3
1911 Female, age 85, right hemisphere 19.5
2148 Female, age 91, left hemisphere 18.7
Dentate gyrus
nTPM: 29.6
1927 Female, age 91, both hemispheres 40.8
2010 Male, age 76, both hemispheres 38.3
2530 Female, age 94, left hemisphere 27.5
2246 Female, age 85, both hemispheres 26.1
2528 Male, age 74, both hemispheres 22.7
2531 Female, age 67, both hemispheres 22.1
Entorhinal gyrus
nTPM: 33.1
1938 Female, age 85, left hemisphere 40.7
2764 Male, age 80, right hemisphere 40.4
2613 Female, age 94, left hemisphere 34.0
1787 Male, age 76, left hemisphere 32.7
2686 Male, age 75, right hemisphere 31.0
2117 Female, age 91, right hemisphere 19.5
Hippocampus, CA1
nTPM: 39.9
2749 Male, age 80, left hemisphere 83.8
1873 Female, age 85, both hemispheres 42.0
2045 Male, age 76, both hemispheres 28.7
2527 Male, age 74, both hemispheres 27.1
2082 Female, age 91, right hemisphere 18.1
Hippocampus, CA2
nTPM: 33.0
1892 Male, age 76, both hemispheres 62.1
1963 Male, age 80, left hemisphere 51.7
1940 Female, age 85, left hemisphere 25.7
2437 Female, age 94, left hemisphere 22.5
2249 Male, age 74, both hemispheres 20.5
2113 Female, age 91, right hemisphere 15.3
Hippocampus, CA3
nTPM: 33.1
2137 Male, age 80, left hemisphere 57.6
1867 Male, age 76, both hemispheres 46.5
1891 Female, age 85, both hemispheres 27.2
2620 Female, age 94, left hemisphere 26.6
2861 Female, age 67, both hemispheres 22.6
2436 Male, age 74, both hemispheres 17.9
Parahippocampal cortex
nTPM: 32.6
1850 Male, age 80, both hemispheres 55.0
1933 Female, age 85, both hemispheres 40.0
1990 Female, age 91, right hemisphere 35.8
2245 Female, age 91, both hemispheres 34.3
2532 Female, age 72, left hemisphere 30.9
2693 Female, age 94, both hemispheres 29.8
2250 Female, age 67, right hemisphere 29.6
2692 Male, age 74, both hemispheres 27.6
2622 Female, age 67, right hemisphere 23.2
2018 Male, age 76, both hemispheres 19.5
Perirhinal gyrus
nTPM: 46.2
1847 Female, age 91, left hemisphere 58.1
1794 Male, age 80, right hemisphere 53.9
1841 Female, age 85, right hemisphere 46.0
2521 Female, age 94, right hemisphere 39.6
2848 Male, age 76, right hemisphere 33.6
Subiculum
nTPM: 27.0
1901 Male, age 80, both hemispheres 41.1
1977 Female, age 85, both hemispheres 37.2
2438 Female, age 94, left hemisphere 23.5
2619 Male, age 74, both hemispheres 22.4
2042 Male, age 76, both hemispheres 22.2
2729 Female, age 91, right hemisphere 15.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 55.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.4
Samples: 197

Max nTPM: 100.8
Min nTPM: 27.0
Std nTPM: 13.7
Median nTPM: 51.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 100.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 98.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 93.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 91.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 90.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 90.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 90.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 88.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 86.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 86.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 84.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 152.2
FF:10153-102I9 76 years, female 178.8
FF:10169-103B7 60 years, female 125.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 139.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 139.6
Samples: 4

Max nTPM: 163.6
Min nTPM: 111.1
Sample A Female 163.6
Sample B Female 139.6
Sample C Male 144.1
Sample D Male 111.1
Entorhinal cortex
nTPM: 139.9
Samples: 4

Max nTPM: 146.8
Min nTPM: 128.4
Sample A Female 138.3
Sample B Female 146.8
Sample C Male 146.0
Sample D Male 128.4
Subiculum
nTPM: 131.5
Samples: 4

Max nTPM: 171.1
Min nTPM: 114.4
Sample A Female 171.1
Sample B Female 114.4
Sample C Male 121.4
Sample D Male 118.9
Ventral hippocampus
nTPM: 120.7
Samples: 4

Max nTPM: 132.9
Min nTPM: 97.4
Sample A Female 132.9
Sample B Female 97.4
Sample C Male 119.7
Sample D Male 132.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 204.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 205.0
Samples: 4

Max nTPM: 245.3
Min nTPM: 183.8
Sample A Male 192.6
Sample B Male 198.1
Sample C Female 183.8
Sample D Female 245.3
Hippocampal formation
nTPM: 194.6
Samples: 4

Max nTPM: 228.0
Min nTPM: 163.3
Sample A Male 177.6
Sample B Male 209.3
Sample C Female 228.0
Sample D Female 163.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.9
2461 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 21.9
2460 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 19.2
71765004 Antisense, RP_050926_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.