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PAFAH1B1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.4 nTPM
HPA:38.4 nTPM
GTEx:58.4 nTPM
FANTOM5:120.3 Scaled Tags Per Million
Pig:131.7 nTPM
Mouse:209.1 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2586 Male, age 75, left hemisphere 45.1
2666 Male, age 74, left hemisphere 35.1
1827 Male, age 72, unknown 34.2
2411 Female, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 30.0
1870 Female, age 42, unknown 29.1
2019 Male, age 18, unknown 28.5
2828 Female, age 72, unknown 23.3
1833 Male, age 53, unknown 21.6
1830 Male, age 51, unknown 20.0
Dorsal raphe nucleus
nTPM: 28.1
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.1
2298 Female, age 72, unknown 30.7
1828 Male, age 53, unknown 28.5
2016 Female, age 72, unknown 16.4
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 26.7
1890 Male, age 53, unknown 26.5
1848 Female, age 42, unknown 24.8
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Pedunculopontine tegmental nucleus
nTPM: 27.5
2334 Male, age 80, both hemispheres 34.4
1921 Female, age 85, both hemispheres 31.5
2338 Male, age 61, both hemispheres 16.6
Periaquaductal grey, anterior
nTPM: 31.1
1947 Male, age 18, unknown 35.0
2502 Female, age 75, unknown 30.0
1795 Male, age 51, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 23.0
2464 Female, age 72, unknown 20.9
1831 Male, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 17.0
Periaquaductal grey, lateral
nTPM: 13.1
2053 Male, age 18, unknown 18.6
2272 Male, age 74, both hemispheres 12.2
2140 Male, age 76, both hemispheres 8.4
Pretectal area
nTPM: 31.1
1816 Male, age 51, unknown 50.5
1944 Female, age 72, unknown 44.9
1817 Female, age 42, unknown 44.8
2007 Male, age 72, unknown 43.7
1815 Male, age 53, unknown 36.1
2667 Female, age 75, unknown 28.9
2224 Female, age 72, unknown 24.4
2825 Male, age 18, unknown 23.2
2407 Male, age 75, both hemispheres 21.9
2273 Male, age 74, both hemispheres 12.8
2316 Male, age 76, right hemisphere 10.9
Red nucleus
nTPM: 26.3
1821 Female, age 72, unknown 39.0
2725 Female, age 75, unknown 32.0
2588 Male, age 74, left hemisphere 30.4
2584 Male, age 75, left hemisphere 29.7
2503 Female, age 72, unknown 28.7
1954 Female, age 42, unknown 26.3
2785 Male, age 18, unknown 25.3
1865 Male, age 51, unknown 23.6
1904 Male, age 53, unknown 22.2
2769 Male, age 72, unknown 20.9
2227 Male, age 72, unknown 20.4
2823 Male, age 76, right hemisphere 16.7
Substantia nigra
nTPM: 38.0
1916 Female, age 42, unknown 54.3
2241 Male, age 72, unknown 48.8
1941 Male, age 53, unknown 47.0
1889 Female, age 72, unknown 42.7
1851 Male, age 51, unknown 41.8
2583 Male, age 75, right hemisphere 32.7
2409 Female, age 72, unknown 30.9
2665 Male, age 74, both hemispheres 30.3
2699 Male, age 18, unknown 27.3
2590 Female, age 75, unknown 24.2
Superior colliculus
nTPM: 27.0
2668 Female, age 75, unknown 35.0
2087 Female, age 72, unknown 33.2
2261 Male, age 18, unknown 33.0
2664 Male, age 75, both hemispheres 29.4
1796 Male, age 53, unknown 29.2
1895 Male, age 76, right hemisphere 26.2
2587 Male, age 74, left hemisphere 24.6
1839 Male, age 51, unknown 23.8
1913 Female, age 42, unknown 20.1
1995 Male, age 72, unknown 15.6
Ventral tegmental area
nTPM: 31.5
2218 Male, age 76, both hemispheres 39.3
2410 Female, age 72, unknown 37.7
1915 Female, age 42, unknown 37.0
1942 Male, age 51, unknown 28.5
2223 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.4
Samples: 139

Max nTPM: 137.3
Min nTPM: 35.5
Std nTPM: 17.5
Median nTPM: 53.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 122.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 99.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 93.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 90.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 89.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 88.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 84.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.3
FF:10158-103A5 76 years, female 120.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 131.7
Pig sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 180.8
Min nTPM: 108.4
Sample A Female 108.4
Sample B Female 110.2
Sample C Male 180.8
Sample D Male 127.5
Periaqueductal gray
nTPM: 97.6
Samples: 3

Max nTPM: 112.1
Min nTPM: 83.8
Sample B Female 96.9
Sample C Male 112.1
Sample D Male 83.8
Substantia nigra
nTPM: 113.0
Samples: 4

Max nTPM: 154.4
Min nTPM: 74.1
Sample A Female 154.4
Sample B Female 85.8
Sample C Male 137.6
Sample D Male 74.1
Superior colliculi
nTPM: 130.0
Samples: 4

Max nTPM: 172.7
Min nTPM: 79.7
Sample A Female 138.5
Sample B Female 79.7
Sample C Male 172.7
Sample D Male 129.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.1
Samples: 4

Max nTPM: 226.1
Min nTPM: 183.2
Sample A Male 183.2
Sample B Male 220.5
Sample C Female 226.1
Sample D Female 206.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
2461 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 20.4
2460 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 19.8
71765004 Antisense, RP_050926_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.