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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:36.7 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:88.5 nTPM
Allen mouse:17.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004847
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.5
2290 Female, age 72, unknown 16.0
2288 Male, age 75, left hemisphere 14.3
2289 Male, age 61, right hemisphere 13.8
1781 Male, age 74, unknown 13.7
1857 Female, age 85, left hemisphere 13.1
2846 Female, age 79, unknown 13.0
1854 Male, age 80, left hemisphere 11.4
2481 Female, age 94, left hemisphere 4.9
Claustrum
nTPM: 15.5
2645 Female, age 72, unknown 21.8
2284 Female, age 91, both hemispheres 21.7
2568 Male, age 61, both hemispheres 21.1
2491 Male, age 75, both hemispheres 20.7
2198 Male, age 80, both hemispheres 14.0
2392 Female, age 94, both hemispheres 11.7
1956 Male, age 74, unknown 10.7
2196 Female, age 79, unknown 9.3
2292 Female, age 85, both hemispheres 8.1
Globus pallidus, externus
nTPM: 3.3
2567 Female, age 72, unknown 4.8
2646 Male, age 61, right hemisphere 4.2
2772 Female, age 79, unknown 3.7
2395 Male, age 75, both hemispheres 2.0
1996 Male, age 80, right hemisphere 1.8
Globus pallidus, internus
nTPM: 2.3
1818 Male, age 74, unknown 4.3
2566 Female, age 72, unknown 3.8
2483 Female, age 94, right hemisphere 3.7
2037 Male, age 80, right hemisphere 3.2
2111 Female, age 85, right hemisphere 0.9
2778 Female, age 91, both hemispheres 0.3
2287 Male, age 75, right hemisphere 0.0
Nucleus accumbens
nTPM: 11.2
1783 Male, age 74, unknown 15.2
1856 Female, age 91, right hemisphere 14.8
2824 Male, age 61, right hemisphere 14.2
1806 Female, age 85, left hemisphere 12.6
2286 Male, age 75, left hemisphere 11.8
2698 Female, age 72, unknown 9.3
2732 Male, age 80, right hemisphere 7.8
2391 Female, age 94, left hemisphere 4.1
Nucleus basalis of Meynert
nTPM: 8.5
2484 Female, age 94, left hemisphere 10.5
2821 Male, age 75, both hemispheres 9.6
2393 Male, age 80, right hemisphere 9.2
2569 Male, age 61, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 18.2
2029 Male, age 61, right hemisphere 22.7
2195 Female, age 85, both hemispheres 21.5
2775 Male, age 80, right hemisphere 20.8
1812 Female, age 91, both hemispheres 17.1
1979 Male, age 74, unknown 9.0
Olfactory tubercle
nTPM: 21.3
2856 Male, age 75, right hemisphere 23.5
1998 Female, age 91, both hemispheres 23.4
2487 Female, age 94, left hemisphere 22.5
1846 Male, age 80, right hemisphere 15.9
Putamen
nTPM: 12.7
2489 Female, age 72, unknown 16.2
2466 Female, age 79, unknown 15.2
2647 Male, age 75, left hemisphere 14.8
1838 Male, age 80, right hemisphere 13.1
1937 Female, age 91, right hemisphere 12.2
1829 Male, age 74, unknown 11.0
2482 Female, age 94, left hemisphere 6.5
Septal nuclei
nTPM: 16.1
1960 Male, age 74, unknown 25.4
2059 Female, age 85, both hemispheres 20.0
2031 Female, age 72, unknown 18.5
2009 Female, age 91, both hemispheres 16.8
2629 Female, age 94, right hemisphere 16.8
2394 Male, age 61, left hemisphere 8.1
2199 Male, age 80, right hemisphere 6.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 73.0
Min nTPM: 3.7
Std nTPM: 12.4
Median nTPM: 32.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 73.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 66.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 62.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 59.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 59.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 59.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 58.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 58.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 58.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.7
Samples: 246

Max nTPM: 82.0
Min nTPM: 2.5
Std nTPM: 12.5
Median nTPM: 36.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 82.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 72.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 70.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 65.3
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 62.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 61.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 59.4
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 58.0
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 58.0
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 57.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.2
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Brain - Putamen (basal ganglia)
Average nTPM: 33.6
Samples: 205

Max nTPM: 67.6
Min nTPM: 3.3
Std nTPM: 12.5
Median nTPM: 33.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 67.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 64.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 62.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 62.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 59.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 58.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 56.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 56.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 55.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 55.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 54.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.9
FF:10164-103B2 76 years, female 16.9
Globus pallidus
Scaled Tags Per Million: 3.0
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.8
Nucleus accumbens
Scaled Tags Per Million: 21.7
FF:10037-101F1 23-56 years, mixed 21.7
Putamen
Scaled Tags Per Million: 18.5
FF:10176-103C5 60 years, female 18.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Caudate
nTPM: 2.2
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 2.7
Sample C Male 1.9
Sample D Male 1.8
Putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.6
Sample A Female 2.2
Sample B Female 2.1
Sample C Male 1.6
Sample D Male 1.7
Septum
nTPM: 5.4
Samples: 4

Max nTPM: 8.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.2
Sample C Male 8.4
Sample D Male 4.9
Ventral pallidum
nTPM: 3.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.2
Sample A Female 2.9
Sample B Female 2.9
Sample C Male 5.3
Sample D Male 2.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 88.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.5
Samples: 4

Max nTPM: 100.9
Min nTPM: 74.9
Sample A Male 90.1
Sample B Male 100.9
Sample C Female 74.9
Sample D Female 87.9
Septum
nTPM: 75.2
Samples: 4

Max nTPM: 83.3
Min nTPM: 68.0
Sample A Male 73.9
Sample B Male 83.3
Sample C Female 75.4
Sample D Female 68.0
Ventral forebrain
nTPM: 84.6
Samples: 4

Max nTPM: 98.2
Min nTPM: 70.3
Sample A Male 87.4
Sample B Male 70.3
Sample C Female 98.2
Sample D Female 82.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.2
76135823 Antisense, RP_060711_04_D03, Mouse strain C57BL/6J (56 days, male) 17.5
69752089 Antisense, RP_050505_01_B03, Mouse strain C57BL/6J (56 days, male) 16.9
Pallidum
Expression energy: 12.3
69752089 Antisense, RP_050505_01_B03, Mouse strain C57BL/6J (56 days, male) 12.9
76135823 Antisense, RP_060711_04_D03, Mouse strain C57BL/6J (56 days, male) 11.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.