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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA030775
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB034143
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 126.0
Min nTPM: 21.6
Std nTPM: 15.8
Median nTPM:
452_1
88 years, female
126.0
413_1
59 years, female
105.4
379_1
60 years, male
98.7
163_1
78 years, male
98.6
353_1
82 years, female
97.9
501_1
88 years, male
94.6
506_1
65 years, male
92.3
243_1
75 years, male
92.2
295_1
61 years, female
90.8
288_1
66 years, female
89.3
99_1
64 years, male
88.8
377_1
82 years, female
87.0
18_1
88 years, male
85.3
386_1
76 years, male
85.2
109_1
81 years, female
84.2
264_1
73 years, female
83.3
394_1
75 years, female
82.5
349_1
83 years, male
82.1
321_1
62 years, female
82.0
376_1
75 years, female
81.9
177_1
74 years, male
81.7
348_1
84 years, male
81.5
318_1
68 years, male
81.3
335_1
73 years, female
80.2
32_1
67 years, male
79.0
149_1
88 years, male
78.5
320_1
89 years, female
78.5
189_1
76 years, male
78.2
291_1
76 years, male
77.8
404_1
82 years, female
77.1
517_1
88 years, male
77.0
4_1
88 years, female
75.5
41_1
94 years, female
74.9
314_1
67 years, male
74.9
229_1
69 years, female
74.7
396_1
62 years, male
73.1
173_1
67 years, male
72.7
313_1
79 years, female
72.6
265_1
87 years, male
72.5
406_1
79 years, male
72.3
153_1
70 years, female
72.1
162_1
79 years, female
72.1
405_1
91 years, male
71.5
292_1
71 years, male
70.7
251_1
78 years, male
70.6
81_1
67 years, male
70.3
115_1
83 years, male
70.2
120_1
70 years, female
69.2
254_1
77 years, female
69.2
356_1
87 years, female
69.2
375_1
74 years, female
69.1
139_1
64 years, female
68.9
17_1
71 years, male
67.8
286_1
68 years, female
67.8
322_1
76 years, male
67.2
351_1
91 years, male
67.2
89_1
63 years, male
67.1
172_1
72 years, female
66.9
324_1
76 years, male
66.4
414_1
84 years, female
66.0
350_1
84 years, female
65.9
117_1
61 years, male
65.1
142_1
61 years, female
64.9
518_1
75 years, female
64.1
466_1
57 years, female
63.6
315_1
62 years, female
62.9
126_1
63 years, male
62.8
355_1
70 years, female
62.6
491_1
89 years, female
62.4
526_1
61 years, male
62.4
266_1
85 years, male
62.2
119_1
70 years, female
61.8
415_1
77 years, female
61.3
319_1
81 years, male
61.0
145_1
84 years, male
60.8
311_1
78 years, male
60.5
217_1
76 years, male
60.1
447_1
81 years, male
59.8
352_1
62 years, male
59.5
42_1
85 years, male
59.3
354_1
81 years, female
59.3
389_1
86 years, female
58.5
246_1
77 years, male
58.2
425_1
59 years, female
58.0
6_1
73 years, female
57.8
43_1
64 years, female
57.7
137_1
83 years, male
57.7
293_1
68 years, female
57.6
347_1
72 years, male
57.3
237_1
82 years, male
55.3
480_1
63 years, male
54.6
317_1
60 years, male
54.3
499_1
55 years, female
54.3
503_1
68 years, male
53.2
2_1
77 years, female
52.2
35_1
74 years, female
50.5
316_1
62 years, male
50.3
9_1
66 years, female
50.2
384_1
83 years, male
49.8
490_1
67 years, female
49.6
468_1
89 years, male
48.8
218_1
71 years, female
34.8
307_1
66 years, female
26.1
308_1
70 years, female
24.3
495_1
57 years, female
21.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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