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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:19.2 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:45.7 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048909
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Hippocampus
nTPM: 23.8
2529 Female, age 94, left hemisphere 26.6
1855 Male, age 76, left hemisphere 23.8
2148 Female, age 91, left hemisphere 23.4
1898 Male, age 80, left hemisphere 23.3
1911 Female, age 85, right hemisphere 23.0
2621 Female, age 67, right hemisphere 22.6
Dentate gyrus
nTPM: 22.8
1927 Female, age 91, both hemispheres 23.1
2531 Female, age 67, both hemispheres 23.1
2530 Female, age 94, left hemisphere 23.0
2010 Male, age 76, both hemispheres 22.7
2246 Female, age 85, both hemispheres 22.6
2528 Male, age 74, both hemispheres 22.5
Entorhinal gyrus
nTPM: 23.5
1787 Male, age 76, left hemisphere 24.3
2686 Male, age 75, right hemisphere 24.1
1938 Female, age 85, left hemisphere 23.7
2117 Female, age 91, right hemisphere 23.2
2764 Male, age 80, right hemisphere 23.2
2613 Female, age 94, left hemisphere 22.5
Hippocampus, CA1
nTPM: 23.3
2749 Male, age 80, left hemisphere 24.1
2082 Female, age 91, right hemisphere 23.8
2045 Male, age 76, both hemispheres 23.4
1873 Female, age 85, both hemispheres 22.7
2527 Male, age 74, both hemispheres 22.5
Hippocampus, CA2
nTPM: 23.4
1963 Male, age 80, left hemisphere 24.5
2113 Female, age 91, right hemisphere 23.9
1892 Male, age 76, both hemispheres 23.6
1940 Female, age 85, left hemisphere 23.1
2437 Female, age 94, left hemisphere 22.9
2249 Male, age 74, both hemispheres 22.1
Hippocampus, CA3
nTPM: 24.1
2861 Female, age 67, both hemispheres 25.1
2137 Male, age 80, left hemisphere 24.6
2620 Female, age 94, left hemisphere 24.6
1867 Male, age 76, both hemispheres 24.1
2436 Male, age 74, both hemispheres 24.1
1891 Female, age 85, both hemispheres 22.3
Parahippocampal cortex
nTPM: 22.7
2622 Female, age 67, right hemisphere 24.1
2018 Male, age 76, both hemispheres 23.1
2692 Male, age 74, both hemispheres 23.0
1933 Female, age 85, both hemispheres 22.8
1850 Male, age 80, both hemispheres 22.7
2532 Female, age 72, left hemisphere 22.7
1990 Female, age 91, right hemisphere 22.4
2250 Female, age 67, right hemisphere 22.2
2245 Female, age 91, both hemispheres 22.1
2693 Female, age 94, both hemispheres 22.0
Perirhinal gyrus
nTPM: 23.0
1847 Female, age 91, left hemisphere 23.4
1794 Male, age 80, right hemisphere 23.3
1841 Female, age 85, right hemisphere 23.3
2848 Male, age 76, right hemisphere 22.5
2521 Female, age 94, right hemisphere 22.3
Subiculum
nTPM: 22.9
2042 Male, age 76, both hemispheres 23.8
2729 Female, age 91, right hemisphere 23.3
1901 Male, age 80, both hemispheres 22.9
1977 Female, age 85, both hemispheres 22.5
2438 Female, age 94, left hemisphere 22.5
2619 Male, age 74, both hemispheres 22.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.2
Samples: 197

Max nTPM: 37.5
Min nTPM: 12.0
Std nTPM: 3.3
Median nTPM: 18.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 37.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 28.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 27.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 27.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 27.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 26.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 26.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 25.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 25.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 25.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 24.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.8
FF:10153-102I9 76 years, female 22.2
FF:10169-103B7 60 years, female 11.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.1
Sample A Female 17.9
Sample B Female 14.3
Sample C Male 12.1
Sample D Male 11.1
Entorhinal cortex
nTPM: 12.1
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.0
Sample A Female 11.8
Sample B Female 12.3
Sample C Male 14.1
Sample D Male 10.0
Subiculum
nTPM: 11.2
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.1
Sample A Female 14.6
Sample B Female 10.7
Sample C Male 10.4
Sample D Male 9.1
Ventral hippocampus
nTPM: 12.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.8
Sample A Female 10.3
Sample B Female 9.8
Sample C Male 14.5
Sample D Male 15.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 40.1
Sample A Male 41.3
Sample B Male 42.1
Sample C Female 46.1
Sample D Female 40.1
Hippocampal formation
nTPM: 45.7
Samples: 4

Max nTPM: 47.3
Min nTPM: 41.6
Sample A Male 46.9
Sample B Male 41.6
Sample C Female 47.3
Sample D Female 46.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
532589 Antisense, RP_040810_02_C12, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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