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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA:24.6 nTPM
GTEx:18.9 nTPM
FANTOM5:33.0 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:30.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
2586 Male, age 75, left hemisphere 29.1
2666 Male, age 74, left hemisphere 26.4
2828 Female, age 72, unknown 25.1
1870 Female, age 42, unknown 24.9
1833 Male, age 53, unknown 24.1
1827 Male, age 72, unknown 24.0
2411 Female, age 72, unknown 24.0
2019 Male, age 18, unknown 23.7
1830 Male, age 51, unknown 23.3
2219 Male, age 76, both hemispheres 21.5
Dorsal raphe nucleus
nTPM: 23.4
2047 Male, age 72, unknown 24.2
2016 Female, age 72, unknown 23.6
2750 Male, age 76, both hemispheres 23.6
1828 Male, age 53, unknown 23.2
2298 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 23.2
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.5
2849 Male, age 72, unknown 22.9
2097 Female, age 72, unknown 22.3
Median raphe nucleus
nTPM: 21.8
2220 Male, age 76, midline 21.8
Pedunculopontine tegmental nucleus
nTPM: 23.2
2338 Male, age 61, both hemispheres 24.7
2334 Male, age 80, both hemispheres 23.1
1921 Female, age 85, both hemispheres 21.8
Periaquaductal grey, anterior
nTPM: 24.6
1795 Male, age 51, unknown 25.0
1947 Male, age 18, unknown 24.9
2502 Female, age 75, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 23.0
1831 Male, age 72, unknown 24.4
2464 Female, age 72, unknown 23.6
1840 Male, age 53, unknown 23.1
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 23.0
2053 Male, age 18, unknown 23.7
2272 Male, age 74, both hemispheres 22.8
2140 Male, age 76, both hemispheres 22.5
Pretectal area
nTPM: 23.4
1816 Male, age 51, unknown 24.6
1817 Female, age 42, unknown 24.6
2407 Male, age 75, both hemispheres 24.1
2825 Male, age 18, unknown 24.0
2007 Male, age 72, unknown 23.7
1944 Female, age 72, unknown 23.6
1815 Male, age 53, unknown 23.4
2316 Male, age 76, right hemisphere 23.0
2667 Female, age 75, unknown 23.0
2224 Female, age 72, unknown 22.5
2273 Male, age 74, both hemispheres 21.3
Red nucleus
nTPM: 24.6
2584 Male, age 75, left hemisphere 27.4
2588 Male, age 74, left hemisphere 26.9
2823 Male, age 76, right hemisphere 25.3
1904 Male, age 53, unknown 24.9
2769 Male, age 72, unknown 24.5
1954 Female, age 42, unknown 24.3
2227 Male, age 72, unknown 24.3
1821 Female, age 72, unknown 23.9
2503 Female, age 72, unknown 23.8
2785 Male, age 18, unknown 23.8
1865 Male, age 51, unknown 23.4
2725 Female, age 75, unknown 23.0
Substantia nigra
nTPM: 24.6
2583 Male, age 75, right hemisphere 27.8
2590 Female, age 75, unknown 26.0
1851 Male, age 51, unknown 25.7
2665 Male, age 74, both hemispheres 25.5
1916 Female, age 42, unknown 24.5
2699 Male, age 18, unknown 24.2
2409 Female, age 72, unknown 23.5
1889 Female, age 72, unknown 23.2
2241 Male, age 72, unknown 23.1
1941 Male, age 53, unknown 22.6
Superior colliculus
nTPM: 24.0
2664 Male, age 75, both hemispheres 25.9
2668 Female, age 75, unknown 25.4
1796 Male, age 53, unknown 24.2
2261 Male, age 18, unknown 24.1
1995 Male, age 72, unknown 23.9
1839 Male, age 51, unknown 23.6
2087 Female, age 72, unknown 23.5
1913 Female, age 42, unknown 23.4
2587 Male, age 74, left hemisphere 23.2
1895 Male, age 76, right hemisphere 22.6
Ventral tegmental area
nTPM: 24.2
2021 Male, age 53, unknown 25.8
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 23.9
2410 Female, age 72, unknown 23.9
2218 Male, age 76, both hemispheres 23.8
2223 Female, age 72, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 36.0
Min nTPM: 10.6
Std nTPM: 3.9
Median nTPM: 18.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 36.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 31.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 30.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 29.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 29.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 27.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 26.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 25.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 24.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.0
FF:10158-103A5 76 years, female 33.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.4
Sample A Female 12.9
Sample B Female 8.4
Sample C Male 10.4
Sample D Male 9.9
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 8.9
Min nTPM: 7.7
Sample B Female 8.3
Sample C Male 8.9
Sample D Male 7.7
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 10.2
Min nTPM: 8.7
Sample A Female 10.2
Sample B Female 9.7
Sample C Male 8.7
Sample D Male 9.9
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.7
Sample A Female 11.3
Sample B Female 12.1
Sample C Male 9.7
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 33.4
Min nTPM: 28.7
Sample A Male 33.4
Sample B Male 28.7
Sample C Female 31.2
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
532589 Antisense, RP_040810_02_C12, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.