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SLC6A13
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:14.1 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:5.3 nTPM
Mouse:22.3 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.8
2288 Male, age 75, left hemisphere 13.5
2846 Female, age 79, unknown 12.7
1854 Male, age 80, left hemisphere 12.0
2290 Female, age 72, unknown 11.8
1781 Male, age 74, unknown 11.3
2481 Female, age 94, left hemisphere 11.2
1857 Female, age 85, left hemisphere 10.8
2289 Male, age 61, right hemisphere 10.8
Claustrum
nTPM: 12.1
2568 Male, age 61, both hemispheres 13.7
2645 Female, age 72, unknown 13.3
2392 Female, age 94, both hemispheres 12.9
2284 Female, age 91, both hemispheres 12.5
2198 Male, age 80, both hemispheres 11.8
2292 Female, age 85, both hemispheres 11.6
2491 Male, age 75, both hemispheres 11.2
2196 Female, age 79, unknown 11.0
1956 Male, age 74, unknown 10.6
Globus pallidus, externus
nTPM: 11.5
2567 Female, age 72, unknown 12.9
2646 Male, age 61, right hemisphere 11.8
1996 Male, age 80, right hemisphere 11.1
2772 Female, age 79, unknown 11.1
2395 Male, age 75, both hemispheres 10.7
Globus pallidus, internus
nTPM: 11.3
2037 Male, age 80, right hemisphere 12.0
2566 Female, age 72, unknown 11.5
1818 Male, age 74, unknown 11.3
2111 Female, age 85, right hemisphere 11.2
2287 Male, age 75, right hemisphere 11.2
2778 Female, age 91, both hemispheres 11.0
2483 Female, age 94, right hemisphere 10.9
Nucleus accumbens
nTPM: 11.1
2286 Male, age 75, left hemisphere 12.5
1806 Female, age 85, left hemisphere 11.3
1783 Male, age 74, unknown 11.2
1856 Female, age 91, right hemisphere 11.1
2391 Female, age 94, left hemisphere 10.9
2732 Male, age 80, right hemisphere 10.9
2824 Male, age 61, right hemisphere 10.7
2698 Female, age 72, unknown 10.1
Nucleus basalis of Meynert
nTPM: 12.4
2821 Male, age 75, both hemispheres 13.0
2569 Male, age 61, both hemispheres 12.8
2393 Male, age 80, right hemisphere 12.0
2484 Female, age 94, left hemisphere 11.8
Nucleus of the diagonal band
nTPM: 14.9
1979 Male, age 74, unknown 22.7
2195 Female, age 85, both hemispheres 14.7
1812 Female, age 91, both hemispheres 13.1
2775 Male, age 80, right hemisphere 12.3
2029 Male, age 61, right hemisphere 11.8
Olfactory tubercle
nTPM: 12.1
2487 Female, age 94, left hemisphere 13.4
2856 Male, age 75, right hemisphere 12.3
1998 Female, age 91, both hemispheres 11.4
1846 Male, age 80, right hemisphere 11.2
Putamen
nTPM: 13.4
2647 Male, age 75, left hemisphere 18.3
2489 Female, age 72, unknown 15.3
1838 Male, age 80, right hemisphere 13.3
2466 Female, age 79, unknown 13.1
1937 Female, age 91, right hemisphere 11.7
1829 Male, age 74, unknown 11.6
2482 Female, age 94, left hemisphere 10.9
Septal nuclei
nTPM: 16.5
2059 Female, age 85, both hemispheres 25.2
2199 Male, age 80, right hemisphere 23.3
2009 Female, age 91, both hemispheres 16.2
2394 Male, age 61, left hemisphere 13.5
1960 Male, age 74, unknown 13.0
2629 Female, age 94, right hemisphere 12.7
2031 Female, age 72, unknown 11.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.8
Samples: 246

Max nTPM: 39.2
Min nTPM: 1.5
Std nTPM: 6.5
Median nTPM: 9.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 37.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 35.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 34.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 30.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 29.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 29.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 29.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 27.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 25.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 24.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 36.5
Min nTPM: 1.0
Std nTPM: 4.6
Median nTPM: 6.3
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 36.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 29.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 25.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 25.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 21.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 18.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 17.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 17.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 17.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 17.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 16.5
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Brain - Putamen (basal ganglia)
Average nTPM: 14.1
Samples: 205

Max nTPM: 51.8
Min nTPM: 2.2
Std nTPM: 8.2
Median nTPM: 12.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 51.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 43.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 42.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 37.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 36.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 36.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 35.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 33.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 31.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 31.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 30.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.8
FF:10164-103B2 76 years, female 4.8
Globus pallidus
Scaled Tags Per Million: 4.3
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 18.0
FF:10037-101F1 23-56 years, mixed 18.0
Putamen
Scaled Tags Per Million: 5.9
FF:10176-103C5 60 years, female 5.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.3
Pig sample Sample description nTPM
Caudate
nTPM: 4.2
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 4.9
Sample C Male 3.9
Sample D Male 5.3
Putamen
nTPM: 5.0
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 6.0
Sample C Male 4.5
Sample D Male 5.6
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 4.2
Sample C Male 4.1
Sample D Male 3.0
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 8.6
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 8.6
Sample C Male 4.3
Sample D Male 4.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.0
Sample A Male 3.0
Sample B Male 3.5
Sample C Female 3.7
Sample D Female 3.0
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 11.1
Min nTPM: 2.6
Sample A Male 11.1
Sample B Male 4.7
Sample C Female 6.0
Sample D Female 2.6
Ventral forebrain
nTPM: 22.3
Samples: 4

Max nTPM: 31.7
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 28.0
Sample C Female 31.7
Sample D Female 15.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
78534514 Antisense, RP_070620_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
78534514 Antisense, RP_070620_01_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.