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PTBP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:28.4 nTPM
FANTOM5:82.1 Scaled Tags Per Million
Pig:34.6 nTPM
Mouse:11.6 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2828 Female, age 72, unknown 36.7
1830 Male, age 51, unknown 31.4
2019 Male, age 18, unknown 30.7
2666 Male, age 74, left hemisphere 30.4
2586 Male, age 75, left hemisphere 30.3
1870 Female, age 42, unknown 29.9
1833 Male, age 53, unknown 29.5
2219 Male, age 76, both hemispheres 28.7
1827 Male, age 72, unknown 28.3
2411 Female, age 72, unknown 28.0
Dorsal raphe nucleus
nTPM: 31.6
2016 Female, age 72, unknown 36.9
2047 Male, age 72, unknown 31.8
1828 Male, age 53, unknown 30.4
2750 Male, age 76, both hemispheres 29.9
2298 Female, age 72, unknown 28.8
Inferior colliculus
nTPM: 29.7
2849 Male, age 72, unknown 30.7
1848 Female, age 42, unknown 30.2
1890 Male, age 53, unknown 29.4
2097 Female, age 72, unknown 28.5
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Pedunculopontine tegmental nucleus
nTPM: 30.8
2338 Male, age 61, both hemispheres 33.6
2334 Male, age 80, both hemispheres 32.5
1921 Female, age 85, both hemispheres 26.4
Periaquaductal grey, anterior
nTPM: 29.5
1795 Male, age 51, unknown 32.0
2502 Female, age 75, unknown 30.5
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 35.1
2850 Male, age 76, both hemispheres 41.9
1831 Male, age 72, unknown 35.9
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 35.5
2272 Male, age 74, both hemispheres 39.2
2053 Male, age 18, unknown 34.2
2140 Male, age 76, both hemispheres 33.2
Pretectal area
nTPM: 29.7
2273 Male, age 74, both hemispheres 35.1
2407 Male, age 75, both hemispheres 31.9
2825 Male, age 18, unknown 31.0
2667 Female, age 75, unknown 29.9
2007 Male, age 72, unknown 29.2
1817 Female, age 42, unknown 29.1
1815 Male, age 53, unknown 28.9
1944 Female, age 72, unknown 28.9
2224 Female, age 72, unknown 28.7
2316 Male, age 76, right hemisphere 27.1
1816 Male, age 51, unknown 26.7
Red nucleus
nTPM: 32.2
2769 Male, age 72, unknown 35.9
1904 Male, age 53, unknown 34.0
1954 Female, age 42, unknown 33.7
2503 Female, age 72, unknown 33.4
2785 Male, age 18, unknown 33.0
1865 Male, age 51, unknown 32.6
2725 Female, age 75, unknown 32.4
2823 Male, age 76, right hemisphere 32.1
2227 Male, age 72, unknown 30.9
2584 Male, age 75, left hemisphere 30.7
1821 Female, age 72, unknown 29.8
2588 Male, age 74, left hemisphere 28.4
Substantia nigra
nTPM: 28.2
2699 Male, age 18, unknown 35.4
2583 Male, age 75, right hemisphere 31.3
2590 Female, age 75, unknown 31.3
1889 Female, age 72, unknown 30.1
2665 Male, age 74, both hemispheres 27.9
1916 Female, age 42, unknown 27.5
1851 Male, age 51, unknown 27.3
1941 Male, age 53, unknown 26.3
2409 Female, age 72, unknown 22.6
2241 Male, age 72, unknown 21.8
Superior colliculus
nTPM: 30.4
1995 Male, age 72, unknown 37.9
1913 Female, age 42, unknown 35.1
2587 Male, age 74, left hemisphere 32.1
1796 Male, age 53, unknown 31.2
1839 Male, age 51, unknown 30.5
2664 Male, age 75, both hemispheres 30.0
1895 Male, age 76, right hemisphere 29.5
2087 Female, age 72, unknown 26.8
2261 Male, age 18, unknown 25.6
2668 Female, age 75, unknown 25.2
Ventral tegmental area
nTPM: 28.9
2218 Male, age 76, both hemispheres 32.8
2021 Male, age 53, unknown 31.3
2410 Female, age 72, unknown 30.0
1942 Male, age 51, unknown 27.9
2223 Female, age 72, unknown 25.9
1915 Female, age 42, unknown 25.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 64.9
Min nTPM: 10.1
Std nTPM: 9.3
Median nTPM: 26.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 64.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 54.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 50.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 49.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 48.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 42.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.1
FF:10158-103A5 76 years, female 82.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.6
Pig sample Sample description nTPM
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 40.0
Min nTPM: 21.0
Sample A Female 40.0
Sample B Female 27.4
Sample C Male 21.6
Sample D Male 21.0
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 31.9
Min nTPM: 28.8
Sample B Female 28.8
Sample C Male 31.9
Sample D Male 30.6
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 37.7
Min nTPM: 28.4
Sample A Female 29.9
Sample B Female 37.7
Sample C Male 28.4
Sample D Male 35.1
Superior colliculi
nTPM: 34.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 22.5
Sample A Female 33.9
Sample B Female 54.4
Sample C Male 22.5
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.7
Sample A Male 13.4
Sample B Male 11.4
Sample C Female 12.0
Sample D Female 9.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
356857 Antisense, RP_040617_01_H06, Mouse strain C57BL/6J (56 days, male) 5.5
76081929 Antisense, RP_060626_01_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.