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PPP5C
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA:28.2 nTPM
GTEx:31.9 nTPM
FANTOM5:59.9 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:70.2 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2019 Male, age 18, unknown 28.4
2586 Male, age 75, left hemisphere 27.2
1827 Male, age 72, unknown 27.0
2411 Female, age 72, unknown 26.8
2219 Male, age 76, both hemispheres 25.7
1870 Female, age 42, unknown 24.9
2828 Female, age 72, unknown 24.8
2666 Male, age 74, left hemisphere 24.5
1833 Male, age 53, unknown 23.7
1830 Male, age 51, unknown 22.8
Dorsal raphe nucleus
nTPM: 25.5
2298 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 26.2
1828 Male, age 53, unknown 26.0
2750 Male, age 76, both hemispheres 25.0
2016 Female, age 72, unknown 22.3
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 25.4
1848 Female, age 42, unknown 25.3
1890 Male, age 53, unknown 24.9
2849 Male, age 72, unknown 24.2
Median raphe nucleus
nTPM: 26.3
2220 Male, age 76, midline 26.3
Pedunculopontine tegmental nucleus
nTPM: 24.7
2334 Male, age 80, both hemispheres 25.9
1921 Female, age 85, both hemispheres 25.8
2338 Male, age 61, both hemispheres 22.3
Periaquaductal grey, anterior
nTPM: 27.3
1795 Male, age 51, unknown 29.0
1947 Male, age 18, unknown 27.6
2502 Female, age 75, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 24.3
2850 Male, age 76, both hemispheres 26.1
1831 Male, age 72, unknown 24.8
1840 Male, age 53, unknown 23.3
2464 Female, age 72, unknown 23.0
Periaquaductal grey, lateral
nTPM: 23.6
2272 Male, age 74, both hemispheres 25.9
2140 Male, age 76, both hemispheres 22.7
2053 Male, age 18, unknown 22.3
Pretectal area
nTPM: 28.0
1816 Male, age 51, unknown 32.6
1944 Female, age 72, unknown 32.6
2007 Male, age 72, unknown 32.1
1817 Female, age 42, unknown 31.8
2667 Female, age 75, unknown 30.4
1815 Male, age 53, unknown 29.1
2224 Female, age 72, unknown 26.5
2273 Male, age 74, both hemispheres 24.7
2825 Male, age 18, unknown 23.6
2407 Male, age 75, both hemispheres 23.4
2316 Male, age 76, right hemisphere 20.9
Red nucleus
nTPM: 25.3
2725 Female, age 75, unknown 27.9
2785 Male, age 18, unknown 27.4
1821 Female, age 72, unknown 27.0
2588 Male, age 74, left hemisphere 27.0
1865 Male, age 51, unknown 25.6
2503 Female, age 72, unknown 25.0
2769 Male, age 72, unknown 24.7
2227 Male, age 72, unknown 24.5
1954 Female, age 42, unknown 24.4
2584 Male, age 75, left hemisphere 23.9
1904 Male, age 53, unknown 23.6
2823 Male, age 76, right hemisphere 22.9
Substantia nigra
nTPM: 28.2
1916 Female, age 42, unknown 35.8
1941 Male, age 53, unknown 32.7
1889 Female, age 72, unknown 31.7
1851 Male, age 51, unknown 29.2
2665 Male, age 74, both hemispheres 27.4
2241 Male, age 72, unknown 26.1
2699 Male, age 18, unknown 25.9
2409 Female, age 72, unknown 25.0
2583 Male, age 75, right hemisphere 24.8
2590 Female, age 75, unknown 22.9
Superior colliculus
nTPM: 25.3
2087 Female, age 72, unknown 28.1
1796 Male, age 53, unknown 27.9
2668 Female, age 75, unknown 27.2
2261 Male, age 18, unknown 27.1
1895 Male, age 76, right hemisphere 25.5
2587 Male, age 74, left hemisphere 25.3
2664 Male, age 75, both hemispheres 23.4
1839 Male, age 51, unknown 23.1
1995 Male, age 72, unknown 22.6
1913 Female, age 42, unknown 22.5
Ventral tegmental area
nTPM: 26.4
2410 Female, age 72, unknown 30.4
1915 Female, age 42, unknown 28.5
2218 Male, age 76, both hemispheres 28.4
1942 Male, age 51, unknown 24.4
2223 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 22.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 79.0
Min nTPM: 15.1
Std nTPM: 10.2
Median nTPM: 29.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 79.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 49.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 47.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 47.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 45.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 45.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.9
FF:10158-103A5 76 years, female 59.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.6
Sample A Female 20.9
Sample B Female 16.6
Sample C Male 24.2
Sample D Male 21.4
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 19.6
Min nTPM: 15.6
Sample B Female 16.7
Sample C Male 19.6
Sample D Male 15.6
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.0
Sample A Female 20.2
Sample B Female 14.0
Sample C Male 20.1
Sample D Male 16.2
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.1
Sample A Female 24.6
Sample B Female 20.1
Sample C Male 24.3
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.2
Samples: 4

Max nTPM: 74.2
Min nTPM: 64.8
Sample A Male 73.5
Sample B Male 64.8
Sample C Female 68.2
Sample D Female 74.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
413805 Antisense, RP_040809_01_F04, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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