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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.9 nTPM
HPA:22.9 nTPM
GTEx:41.5 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:115.7 nTPM
Allen mouse:13.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002044Antibody HPA005471
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.9
Sample id Sample description nTPM
Hippocampus
nTPM: 21.6
1898 Male, age 80, left hemisphere 24.9
2621 Female, age 67, right hemisphere 22.6
1855 Male, age 76, left hemisphere 21.8
2529 Female, age 94, left hemisphere 20.6
1911 Female, age 85, right hemisphere 20.2
2148 Female, age 91, left hemisphere 19.4
Dentate gyrus
nTPM: 21.6
1927 Female, age 91, both hemispheres 23.7
2010 Male, age 76, both hemispheres 23.4
2528 Male, age 74, both hemispheres 22.2
2246 Female, age 85, both hemispheres 20.4
2530 Female, age 94, left hemisphere 20.2
2531 Female, age 67, both hemispheres 19.6
Entorhinal gyrus
nTPM: 20.2
2764 Male, age 80, right hemisphere 22.5
1787 Male, age 76, left hemisphere 21.1
1938 Female, age 85, left hemisphere 21.1
2117 Female, age 91, right hemisphere 21.1
2613 Female, age 94, left hemisphere 19.3
2686 Male, age 75, right hemisphere 16.1
Hippocampus, CA1
nTPM: 22.8
2749 Male, age 80, left hemisphere 28.7
1873 Female, age 85, both hemispheres 22.9
2045 Male, age 76, both hemispheres 21.8
2527 Male, age 74, both hemispheres 20.8
2082 Female, age 91, right hemisphere 20.0
Hippocampus, CA2
nTPM: 22.4
1892 Male, age 76, both hemispheres 25.2
2249 Male, age 74, both hemispheres 24.3
1963 Male, age 80, left hemisphere 24.0
2437 Female, age 94, left hemisphere 21.4
1940 Female, age 85, left hemisphere 20.6
2113 Female, age 91, right hemisphere 19.1
Hippocampus, CA3
nTPM: 21.9
2137 Male, age 80, left hemisphere 25.1
2436 Male, age 74, both hemispheres 23.9
1867 Male, age 76, both hemispheres 23.5
2620 Female, age 94, left hemisphere 20.6
1891 Female, age 85, both hemispheres 20.4
2861 Female, age 67, both hemispheres 17.7
Parahippocampal cortex
nTPM: 20.6
1850 Male, age 80, both hemispheres 22.7
1990 Female, age 91, right hemisphere 21.7
1933 Female, age 85, both hemispheres 21.6
2250 Female, age 67, right hemisphere 21.6
2532 Female, age 72, left hemisphere 21.4
2245 Female, age 91, both hemispheres 20.7
2018 Male, age 76, both hemispheres 20.4
2692 Male, age 74, both hemispheres 18.7
2693 Female, age 94, both hemispheres 18.6
2622 Female, age 67, right hemisphere 18.1
Perirhinal gyrus
nTPM: 22.9
1847 Female, age 91, left hemisphere 25.0
1794 Male, age 80, right hemisphere 23.9
1841 Female, age 85, right hemisphere 23.0
2521 Female, age 94, right hemisphere 22.0
2848 Male, age 76, right hemisphere 20.9
Subiculum
nTPM: 20.4
1901 Male, age 80, both hemispheres 23.2
1977 Female, age 85, both hemispheres 22.1
2042 Male, age 76, both hemispheres 20.5
2619 Male, age 74, both hemispheres 20.4
2729 Female, age 91, right hemisphere 18.9
2438 Female, age 94, left hemisphere 17.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.5
Samples: 197

Max nTPM: 68.3
Min nTPM: 23.2
Std nTPM: 8.4
Median nTPM: 39.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 68.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 66.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 64.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 63.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 63.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 60.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 58.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 58.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 58.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 57.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 56.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.3
FF:10169-103B7 60 years, female 99.4
FF:10153-102I9 76 years, female 73.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.7
Samples: 4

Max nTPM: 26.8
Min nTPM: 17.9
Sample A Female 26.8
Sample B Female 21.3
Sample C Male 20.9
Sample D Male 17.9
Entorhinal cortex
nTPM: 18.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.5
Sample A Female 20.0
Sample B Female 20.0
Sample C Male 16.7
Sample D Male 16.5
Subiculum
nTPM: 17.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.9
Sample A Female 20.2
Sample B Female 17.0
Sample C Male 17.1
Sample D Male 16.9
Ventral hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 21.7
Min nTPM: 16.6
Sample A Female 21.7
Sample B Female 16.6
Sample C Male 21.2
Sample D Male 20.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 115.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.3
Samples: 4

Max nTPM: 115.1
Min nTPM: 95.3
Sample A Male 100.1
Sample B Male 114.5
Sample C Female 115.1
Sample D Female 95.3
Hippocampal formation
nTPM: 115.8
Samples: 4

Max nTPM: 126.7
Min nTPM: 110.3
Sample A Male 126.7
Sample B Male 110.3
Sample C Female 110.9
Sample D Female 115.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.2
513224 Antisense, RP_040810_01_B11, Mouse strain C57BL/6J (56 days, male) 13.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.