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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA:23.5 nTPM
GTEx:43.2 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:114.2 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2411 Female, age 72, unknown 23.2
1827 Male, age 72, unknown 21.9
2019 Male, age 18, unknown 21.9
1870 Female, age 42, unknown 21.4
1833 Male, age 53, unknown 21.3
2219 Male, age 76, both hemispheres 21.2
2828 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 20.7
2666 Male, age 74, left hemisphere 19.3
2586 Male, age 75, left hemisphere 18.8
Dorsal raphe nucleus
nTPM: 22.5
2298 Female, age 72, unknown 26.1
2047 Male, age 72, unknown 22.6
2750 Male, age 76, both hemispheres 22.5
1828 Male, age 53, unknown 21.6
2016 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 21.4
2097 Female, age 72, unknown 23.6
1848 Female, age 42, unknown 21.1
1890 Male, age 53, unknown 20.9
2849 Male, age 72, unknown 20.0
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Pedunculopontine tegmental nucleus
nTPM: 22.3
2334 Male, age 80, both hemispheres 23.1
2338 Male, age 61, both hemispheres 22.0
1921 Female, age 85, both hemispheres 21.9
Periaquaductal grey, anterior
nTPM: 21.9
1947 Male, age 18, unknown 22.6
2502 Female, age 75, unknown 22.2
1795 Male, age 51, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 20.3
2850 Male, age 76, both hemispheres 21.0
2464 Female, age 72, unknown 20.6
1840 Male, age 53, unknown 20.2
1831 Male, age 72, unknown 19.4
Periaquaductal grey, lateral
nTPM: 21.5
2272 Male, age 74, both hemispheres 24.8
2053 Male, age 18, unknown 20.1
2140 Male, age 76, both hemispheres 19.6
Pretectal area
nTPM: 22.2
2273 Male, age 74, both hemispheres 24.8
1817 Female, age 42, unknown 24.0
2007 Male, age 72, unknown 23.3
1816 Male, age 51, unknown 23.0
2224 Female, age 72, unknown 22.9
1944 Female, age 72, unknown 22.7
2667 Female, age 75, unknown 22.1
1815 Male, age 53, unknown 21.9
2825 Male, age 18, unknown 20.4
2407 Male, age 75, both hemispheres 19.9
2316 Male, age 76, right hemisphere 19.2
Red nucleus
nTPM: 21.5
1821 Female, age 72, unknown 23.9
2725 Female, age 75, unknown 22.6
1954 Female, age 42, unknown 22.1
1865 Male, age 51, unknown 22.0
2785 Male, age 18, unknown 22.0
2503 Female, age 72, unknown 21.9
1904 Male, age 53, unknown 21.6
2769 Male, age 72, unknown 21.6
2227 Male, age 72, unknown 21.1
2823 Male, age 76, right hemisphere 20.5
2588 Male, age 74, left hemisphere 19.7
2584 Male, age 75, left hemisphere 18.9
Substantia nigra
nTPM: 22.7
1916 Female, age 42, unknown 27.5
1851 Male, age 51, unknown 24.9
1941 Male, age 53, unknown 24.3
2241 Male, age 72, unknown 24.2
1889 Female, age 72, unknown 23.4
2699 Male, age 18, unknown 22.7
2590 Female, age 75, unknown 20.8
2409 Female, age 72, unknown 20.0
2583 Male, age 75, right hemisphere 19.7
2665 Male, age 74, both hemispheres 19.7
Superior colliculus
nTPM: 20.9
2587 Male, age 74, left hemisphere 22.6
1796 Male, age 53, unknown 22.0
2261 Male, age 18, unknown 21.5
2087 Female, age 72, unknown 21.4
2668 Female, age 75, unknown 21.0
1895 Male, age 76, right hemisphere 20.9
1839 Male, age 51, unknown 20.6
1913 Female, age 42, unknown 20.4
1995 Male, age 72, unknown 19.8
2664 Male, age 75, both hemispheres 18.8
Ventral tegmental area
nTPM: 23.1
2410 Female, age 72, unknown 26.8
1915 Female, age 42, unknown 24.7
2218 Male, age 76, both hemispheres 23.8
2223 Female, age 72, unknown 21.3
1942 Male, age 51, unknown 21.1
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.2
Samples: 139

Max nTPM: 73.0
Min nTPM: 26.2
Std nTPM: 9.4
Median nTPM: 41.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 69.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 60.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 59.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 23.2
Sample A Female 33.8
Sample B Female 23.6
Sample C Male 24.5
Sample D Male 23.2
Periaqueductal gray
nTPM: 20.8
Samples: 3

Max nTPM: 21.6
Min nTPM: 19.6
Sample B Female 21.6
Sample C Male 21.3
Sample D Male 19.6
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 31.5
Min nTPM: 20.4
Sample A Female 31.5
Sample B Female 20.4
Sample C Male 23.4
Sample D Male 24.0
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 22.1
Sample A Female 30.4
Sample B Female 22.1
Sample C Male 27.5
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.2
Samples: 4

Max nTPM: 122.3
Min nTPM: 107.3
Sample A Male 122.3
Sample B Male 112.4
Sample C Female 107.3
Sample D Female 114.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
513224 Antisense, RP_040810_01_B11, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.