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CLDN11
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA:44.2 nTPM
GTEx:99.9 nTPM
FANTOM5:1009.2 Scaled Tags Per Million
Mouse:343.7 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
1870 Female, age 42, unknown 47.0
2411 Female, age 72, unknown 45.4
1833 Male, age 53, unknown 43.3
1830 Male, age 51, unknown 43.2
2019 Male, age 18, unknown 33.4
2828 Female, age 72, unknown 32.9
1827 Male, age 72, unknown 23.2
2586 Male, age 75, left hemisphere 22.8
2219 Male, age 76, both hemispheres 21.5
2666 Male, age 74, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 26.4
2750 Male, age 76, both hemispheres 59.1
2016 Female, age 72, unknown 26.1
1828 Male, age 53, unknown 21.4
2298 Female, age 72, unknown 13.7
2047 Male, age 72, unknown 11.5
Inferior colliculus
nTPM: 21.0
2097 Female, age 72, unknown 23.4
1848 Female, age 42, unknown 21.9
1890 Male, age 53, unknown 20.0
2849 Male, age 72, unknown 18.9
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Pedunculopontine tegmental nucleus
nTPM: 41.1
2338 Male, age 61, both hemispheres 56.9
2334 Male, age 80, both hemispheres 37.6
1921 Female, age 85, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 21.6
2502 Female, age 75, unknown 28.8
1947 Male, age 18, unknown 20.3
1795 Male, age 51, unknown 15.8
Periaquaductal grey, dorsal
nTPM: 15.3
2464 Female, age 72, unknown 25.4
1831 Male, age 72, unknown 17.6
2850 Male, age 76, both hemispheres 11.2
1840 Male, age 53, unknown 7.1
Periaquaductal grey, lateral
nTPM: 17.2
2272 Male, age 74, both hemispheres 21.4
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 21.7
2316 Male, age 76, right hemisphere 33.3
1815 Male, age 53, unknown 29.2
2667 Female, age 75, unknown 29.1
2273 Male, age 74, both hemispheres 23.3
2407 Male, age 75, both hemispheres 22.6
2825 Male, age 18, unknown 21.5
2007 Male, age 72, unknown 21.4
1817 Female, age 42, unknown 21.3
2224 Female, age 72, unknown 17.0
1816 Male, age 51, unknown 10.2
1944 Female, age 72, unknown 9.6
Red nucleus
nTPM: 44.2
1821 Female, age 72, unknown 58.2
2823 Male, age 76, right hemisphere 58.1
2785 Male, age 18, unknown 51.3
1865 Male, age 51, unknown 50.8
1904 Male, age 53, unknown 50.6
2227 Male, age 72, unknown 50.4
2769 Male, age 72, unknown 49.7
2503 Female, age 72, unknown 43.9
1954 Female, age 42, unknown 43.1
2584 Male, age 75, left hemisphere 28.8
2588 Male, age 74, left hemisphere 24.0
2725 Female, age 75, unknown 21.0
Substantia nigra
nTPM: 19.4
1851 Male, age 51, unknown 27.2
1889 Female, age 72, unknown 25.0
2590 Female, age 75, unknown 23.2
2583 Male, age 75, right hemisphere 21.1
2699 Male, age 18, unknown 21.1
1941 Male, age 53, unknown 20.2
2409 Female, age 72, unknown 19.0
2241 Male, age 72, unknown 15.5
1916 Female, age 42, unknown 14.8
2665 Male, age 74, both hemispheres 6.9
Superior colliculus
nTPM: 28.8
1913 Female, age 42, unknown 51.5
1995 Male, age 72, unknown 46.1
1895 Male, age 76, right hemisphere 34.1
2587 Male, age 74, left hemisphere 32.8
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 24.2
2668 Female, age 75, unknown 21.8
2261 Male, age 18, unknown 16.7
2087 Female, age 72, unknown 15.3
2664 Male, age 75, both hemispheres 15.1
Ventral tegmental area
nTPM: 28.9
2223 Female, age 72, unknown 40.6
2410 Female, age 72, unknown 31.7
2218 Male, age 76, both hemispheres 28.1
1942 Male, age 51, unknown 25.1
1915 Female, age 42, unknown 24.3
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.9
Samples: 139

Max nTPM: 439.8
Min nTPM: 15.8
Std nTPM: 73.6
Median nTPM: 76.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 439.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 375.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 331.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 318.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 281.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 278.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 257.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 250.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 243.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 238.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 229.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1009.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1009.2
FF:10158-103A5 76 years, female 1009.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 343.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 343.7
Samples: 4

Max nTPM: 389.0
Min nTPM: 280.5
Sample A Male 317.6
Sample B Male 280.5
Sample C Female 389.0
Sample D Female 387.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
74581223 Antisense, RP_060215_02_G11, Mouse strain C57BL/6J (56 days, male) 13.9
77280580 Antisense, RP_070116_01_G04, Mouse strain C57BL/6J (56 days, male) 11.5
77924438 Antisense, RP_070219_01_H08, Mouse strain C57BL/6J (56 days, male) 10.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.