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SLC25A39
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:72.6 nTPM
HPA:72.6 nTPM
GTEx:56.2 nTPM
FANTOM5:73.6 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:98.9 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026785
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 72.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.9
1854 Male, age 80, left hemisphere 67.4
1781 Male, age 74, unknown 67.0
2481 Female, age 94, left hemisphere 67.0
2290 Female, age 72, unknown 66.9
2846 Female, age 79, unknown 66.1
2289 Male, age 61, right hemisphere 65.3
1857 Female, age 85, left hemisphere 64.5
2288 Male, age 75, left hemisphere 63.1
Claustrum
nTPM: 68.2
2568 Male, age 61, both hemispheres 70.7
2645 Female, age 72, unknown 70.7
2196 Female, age 79, unknown 69.8
2292 Female, age 85, both hemispheres 69.3
2284 Female, age 91, both hemispheres 68.4
2491 Male, age 75, both hemispheres 68.2
2198 Male, age 80, both hemispheres 68.1
1956 Male, age 74, unknown 65.9
2392 Female, age 94, both hemispheres 62.6
Globus pallidus, externus
nTPM: 72.6
2646 Male, age 61, right hemisphere 75.3
2567 Female, age 72, unknown 73.9
1996 Male, age 80, right hemisphere 72.9
2772 Female, age 79, unknown 71.5
2395 Male, age 75, both hemispheres 69.6
Globus pallidus, internus
nTPM: 71.5
2483 Female, age 94, right hemisphere 74.6
2566 Female, age 72, unknown 72.7
1818 Male, age 74, unknown 71.2
2111 Female, age 85, right hemisphere 70.8
2778 Female, age 91, both hemispheres 70.7
2287 Male, age 75, right hemisphere 70.3
2037 Male, age 80, right hemisphere 70.1
Nucleus accumbens
nTPM: 65.8
1806 Female, age 85, left hemisphere 68.8
2732 Male, age 80, right hemisphere 68.7
2698 Female, age 72, unknown 66.2
2286 Male, age 75, left hemisphere 66.0
1856 Female, age 91, right hemisphere 65.5
2391 Female, age 94, left hemisphere 65.0
1783 Male, age 74, unknown 64.7
2824 Male, age 61, right hemisphere 61.8
Nucleus basalis of Meynert
nTPM: 68.5
2569 Male, age 61, both hemispheres 77.4
2484 Female, age 94, left hemisphere 66.6
2821 Male, age 75, both hemispheres 65.5
2393 Male, age 80, right hemisphere 64.6
Nucleus of the diagonal band
nTPM: 65.4
2195 Female, age 85, both hemispheres 66.0
2775 Male, age 80, right hemisphere 65.7
1812 Female, age 91, both hemispheres 65.5
1979 Male, age 74, unknown 65.4
2029 Male, age 61, right hemisphere 64.1
Olfactory tubercle
nTPM: 65.3
2856 Male, age 75, right hemisphere 65.7
1846 Male, age 80, right hemisphere 65.4
2487 Female, age 94, left hemisphere 65.3
1998 Female, age 91, both hemispheres 64.9
Putamen
nTPM: 67.6
2647 Male, age 75, left hemisphere 73.5
2489 Female, age 72, unknown 68.9
2482 Female, age 94, left hemisphere 68.7
2466 Female, age 79, unknown 67.1
1829 Male, age 74, unknown 65.2
1838 Male, age 80, right hemisphere 65.1
1937 Female, age 91, right hemisphere 64.7
Septal nuclei
nTPM: 66.0
2394 Male, age 61, left hemisphere 69.3
1960 Male, age 74, unknown 67.5
2059 Female, age 85, both hemispheres 66.9
2199 Male, age 80, right hemisphere 66.6
2031 Female, age 72, unknown 65.0
2629 Female, age 94, right hemisphere 64.0
2009 Female, age 91, both hemispheres 62.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.1
Samples: 246

Max nTPM: 121.2
Min nTPM: 14.7
Std nTPM: 14.1
Median nTPM: 50.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 121.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 93.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 93.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 86.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 85.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 83.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 82.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 80.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 79.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.9
Samples: 246

Max nTPM: 127.3
Min nTPM: 14.7
Std nTPM: 18.4
Median nTPM: 50.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 127.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 122.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 109.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 108.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 100.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 96.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 95.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 94.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 93.9
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 89.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 89.4
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Brain - Putamen (basal ganglia)
Average nTPM: 56.2
Samples: 205

Max nTPM: 107.5
Min nTPM: 26.1
Std nTPM: 14.9
Median nTPM: 55.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 107.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 100.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 95.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 91.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 87.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 86.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 85.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 84.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 84.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 83.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 83.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.6
FF:10164-103B2 76 years, female 73.6
Globus pallidus
Scaled Tags Per Million: 72.0
FF:10161-103A8 76 years, female 73.8
FF:10175-103C4 60 years, female 70.2
Nucleus accumbens
Scaled Tags Per Million: 49.2
FF:10037-101F1 23-56 years, mixed 49.2
Putamen
Scaled Tags Per Million: 52.9
FF:10176-103C5 60 years, female 52.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Caudate
nTPM: 28.0
Samples: 4

Max nTPM: 33.4
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 31.9
Sample C Male 33.4
Sample D Male 24.7
Putamen
nTPM: 35.7
Samples: 4

Max nTPM: 42.7
Min nTPM: 28.0
Sample A Female 32.8
Sample B Female 28.0
Sample C Male 42.7
Sample D Male 39.3
Septum
nTPM: 30.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 28.7
Sample C Male 34.6
Sample D Male 29.5
Ventral pallidum
nTPM: 33.0
Samples: 4

Max nTPM: 43.5
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 35.8
Sample C Male 43.5
Sample D Male 31.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.7
Samples: 4

Max nTPM: 76.5
Min nTPM: 63.8
Sample A Male 75.0
Sample B Male 76.5
Sample C Female 63.8
Sample D Female 67.6
Septum
nTPM: 98.9
Samples: 4

Max nTPM: 108.3
Min nTPM: 91.1
Sample A Male 96.6
Sample B Male 99.5
Sample C Female 108.3
Sample D Female 91.1
Ventral forebrain
nTPM: 79.6
Samples: 4

Max nTPM: 89.8
Min nTPM: 70.2
Sample A Male 76.0
Sample B Male 82.4
Sample C Female 89.8
Sample D Female 70.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69407409 Antisense, RP_050414_01_F03, Mouse strain C57BL/6J (56 days, male) 0.9
74988740 Antisense, RP_060315_04_B08, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.2
69407409 Antisense, RP_050414_01_F03, Mouse strain C57BL/6J (56 days, male) 1.6
74988740 Antisense, RP_060315_04_B08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.