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SLC25A39
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA:72.7 nTPM
GTEx:60.7 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:70.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.5
2586 Male, age 75, left hemisphere 85.4
2828 Female, age 72, unknown 73.5
2666 Male, age 74, left hemisphere 73.0
2411 Female, age 72, unknown 72.9
2019 Male, age 18, unknown 72.3
1827 Male, age 72, unknown 70.9
1833 Male, age 53, unknown 70.5
1830 Male, age 51, unknown 70.1
1870 Female, age 42, unknown 69.7
2219 Male, age 76, both hemispheres 67.0
Dorsal raphe nucleus
nTPM: 71.4
2298 Female, age 72, unknown 74.3
2047 Male, age 72, unknown 72.1
1828 Male, age 53, unknown 71.2
2750 Male, age 76, both hemispheres 71.0
2016 Female, age 72, unknown 68.3
Inferior colliculus
nTPM: 68.6
1890 Male, age 53, unknown 70.4
2849 Male, age 72, unknown 68.3
1848 Female, age 42, unknown 68.1
2097 Female, age 72, unknown 67.5
Median raphe nucleus
nTPM: 72.6
2220 Male, age 76, midline 72.6
Pedunculopontine tegmental nucleus
nTPM: 71.1
2334 Male, age 80, both hemispheres 72.9
2338 Male, age 61, both hemispheres 72.6
1921 Female, age 85, both hemispheres 67.8
Periaquaductal grey, anterior
nTPM: 72.7
1795 Male, age 51, unknown 73.1
2502 Female, age 75, unknown 72.6
1947 Male, age 18, unknown 72.3
Periaquaductal grey, dorsal
nTPM: 69.3
1831 Male, age 72, unknown 71.1
1840 Male, age 53, unknown 70.1
2464 Female, age 72, unknown 68.1
2850 Male, age 76, both hemispheres 67.9
Periaquaductal grey, lateral
nTPM: 67.3
2140 Male, age 76, both hemispheres 68.2
2053 Male, age 18, unknown 67.7
2272 Male, age 74, both hemispheres 66.1
Pretectal area
nTPM: 70.9
2007 Male, age 72, unknown 75.4
1817 Female, age 42, unknown 75.3
1816 Male, age 51, unknown 74.4
1815 Male, age 53, unknown 72.1
1944 Female, age 72, unknown 71.9
2667 Female, age 75, unknown 71.2
2407 Male, age 75, both hemispheres 70.6
2316 Male, age 76, right hemisphere 68.7
2825 Male, age 18, unknown 68.4
2224 Female, age 72, unknown 66.6
2273 Male, age 74, both hemispheres 65.2
Red nucleus
nTPM: 71.5
2584 Male, age 75, left hemisphere 74.8
2785 Male, age 18, unknown 74.7
1904 Male, age 53, unknown 73.8
2588 Male, age 74, left hemisphere 72.0
2769 Male, age 72, unknown 71.9
2503 Female, age 72, unknown 71.8
2725 Female, age 75, unknown 71.0
2227 Male, age 72, unknown 70.6
1865 Male, age 51, unknown 70.3
1821 Female, age 72, unknown 69.4
1954 Female, age 42, unknown 68.8
2823 Male, age 76, right hemisphere 68.5
Substantia nigra
nTPM: 71.7
2665 Male, age 74, both hemispheres 77.0
1916 Female, age 42, unknown 76.6
2583 Male, age 75, right hemisphere 76.0
1851 Male, age 51, unknown 74.6
1889 Female, age 72, unknown 70.9
2590 Female, age 75, unknown 70.9
2699 Male, age 18, unknown 69.8
1941 Male, age 53, unknown 67.9
2409 Female, age 72, unknown 67.1
2241 Male, age 72, unknown 65.9
Superior colliculus
nTPM: 71.3
2664 Male, age 75, both hemispheres 79.8
2087 Female, age 72, unknown 72.9
1995 Male, age 72, unknown 71.9
2261 Male, age 18, unknown 71.8
2668 Female, age 75, unknown 71.5
1796 Male, age 53, unknown 70.9
1913 Female, age 42, unknown 69.1
2587 Male, age 74, left hemisphere 69.1
1839 Male, age 51, unknown 68.7
1895 Male, age 76, right hemisphere 67.1
Ventral tegmental area
nTPM: 71.9
1915 Female, age 42, unknown 74.3
2410 Female, age 72, unknown 73.9
2021 Male, age 53, unknown 70.8
2223 Female, age 72, unknown 70.8
1942 Male, age 51, unknown 70.7
2218 Male, age 76, both hemispheres 70.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.7
Samples: 139

Max nTPM: 107.6
Min nTPM: 26.0
Std nTPM: 14.1
Median nTPM: 59.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 107.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 100.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 92.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 92.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 84.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 83.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.8
FF:10158-103A5 76 years, female 70.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.2
Pig sample Sample description nTPM
Midbrain
nTPM: 44.2
Samples: 4

Max nTPM: 59.7
Min nTPM: 32.9
Sample A Female 59.7
Sample B Female 38.2
Sample C Male 46.0
Sample D Male 32.9
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 34.9
Min nTPM: 28.6
Sample B Female 31.0
Sample C Male 34.9
Sample D Male 28.6
Substantia nigra
nTPM: 44.0
Samples: 4

Max nTPM: 50.6
Min nTPM: 35.5
Sample A Female 50.6
Sample B Female 35.5
Sample C Male 48.0
Sample D Male 41.9
Superior colliculi
nTPM: 41.9
Samples: 4

Max nTPM: 45.5
Min nTPM: 38.7
Sample A Female 41.3
Sample B Female 38.7
Sample C Male 45.5
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.1
Samples: 4

Max nTPM: 75.7
Min nTPM: 63.1
Sample A Male 75.7
Sample B Male 68.3
Sample C Female 63.1
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69407409 Antisense, RP_050414_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
74988740 Antisense, RP_060315_04_B08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.