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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.0 nTPM
HPA:63.0 nTPM
GTEx:63.2 nTPM
FANTOM5:388.4 Scaled Tags Per Million
Pig:111.4 nTPM
Mouse:169.3 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.1
1870 Female, age 42, unknown 62.3
2411 Female, age 72, unknown 62.3
2019 Male, age 18, unknown 58.8
1827 Male, age 72, unknown 54.0
1830 Male, age 51, unknown 53.5
1833 Male, age 53, unknown 53.3
2219 Male, age 76, both hemispheres 53.2
2666 Male, age 74, left hemisphere 52.5
2828 Female, age 72, unknown 46.5
2586 Male, age 75, left hemisphere 44.6
Dorsal raphe nucleus
nTPM: 55.8
2750 Male, age 76, both hemispheres 67.1
1828 Male, age 53, unknown 55.3
2047 Male, age 72, unknown 54.9
2298 Female, age 72, unknown 54.8
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 49.1
2097 Female, age 72, unknown 55.1
1890 Male, age 53, unknown 49.5
1848 Female, age 42, unknown 49.4
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 62.4
2220 Male, age 76, midline 62.4
Pedunculopontine tegmental nucleus
nTPM: 57.9
2334 Male, age 80, both hemispheres 60.1
2338 Male, age 61, both hemispheres 57.0
1921 Female, age 85, both hemispheres 56.7
Periaquaductal grey, anterior
nTPM: 52.5
1947 Male, age 18, unknown 58.5
2502 Female, age 75, unknown 51.2
1795 Male, age 51, unknown 47.8
Periaquaductal grey, dorsal
nTPM: 44.5
2464 Female, age 72, unknown 49.5
1831 Male, age 72, unknown 49.4
2850 Male, age 76, both hemispheres 39.6
1840 Male, age 53, unknown 39.5
Periaquaductal grey, lateral
nTPM: 47.4
2272 Male, age 74, both hemispheres 55.2
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 55.3
1816 Male, age 51, unknown 60.3
1944 Female, age 72, unknown 58.5
2007 Male, age 72, unknown 58.5
1815 Male, age 53, unknown 58.4
2273 Male, age 74, both hemispheres 58.3
1817 Female, age 42, unknown 57.4
2224 Female, age 72, unknown 56.8
2667 Female, age 75, unknown 54.5
2825 Male, age 18, unknown 49.6
2407 Male, age 75, both hemispheres 48.3
2316 Male, age 76, right hemisphere 47.7
Red nucleus
nTPM: 54.1
1821 Female, age 72, unknown 64.0
2725 Female, age 75, unknown 58.5
2823 Male, age 76, right hemisphere 56.9
1954 Female, age 42, unknown 56.0
2503 Female, age 72, unknown 55.6
1865 Male, age 51, unknown 55.0
1904 Male, age 53, unknown 53.8
2785 Male, age 18, unknown 52.4
2227 Male, age 72, unknown 50.6
2588 Male, age 74, left hemisphere 50.0
2584 Male, age 75, left hemisphere 48.6
2769 Male, age 72, unknown 48.4
Substantia nigra
nTPM: 63.0
2241 Male, age 72, unknown 80.0
1916 Female, age 42, unknown 72.7
1941 Male, age 53, unknown 71.0
2409 Female, age 72, unknown 69.1
1851 Male, age 51, unknown 67.5
1889 Female, age 72, unknown 61.4
2590 Female, age 75, unknown 56.5
2583 Male, age 75, right hemisphere 54.3
2699 Male, age 18, unknown 53.1
2665 Male, age 74, both hemispheres 44.2
Superior colliculus
nTPM: 50.7
1895 Male, age 76, right hemisphere 55.2
2587 Male, age 74, left hemisphere 54.5
2261 Male, age 18, unknown 53.9
1913 Female, age 42, unknown 53.7
2668 Female, age 75, unknown 53.1
2087 Female, age 72, unknown 52.3
1796 Male, age 53, unknown 50.0
1839 Male, age 51, unknown 50.0
1995 Male, age 72, unknown 45.3
2664 Male, age 75, both hemispheres 38.7
Ventral tegmental area
nTPM: 60.6
1915 Female, age 42, unknown 64.4
2218 Male, age 76, both hemispheres 64.2
2410 Female, age 72, unknown 61.6
2223 Female, age 72, unknown 61.0
2021 Male, age 53, unknown 56.5
1942 Male, age 51, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.2
Samples: 139

Max nTPM: 129.5
Min nTPM: 28.3
Std nTPM: 17.3
Median nTPM: 61.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 109.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 109.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 104.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 97.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 96.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 95.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 92.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 388.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 388.4
FF:10158-103A5 76 years, female 388.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.4
Pig sample Sample description nTPM
Midbrain
nTPM: 111.4
Samples: 4

Max nTPM: 134.8
Min nTPM: 96.1
Sample A Female 134.8
Sample B Female 97.4
Sample C Male 117.4
Sample D Male 96.1
Periaqueductal gray
nTPM: 82.1
Samples: 3

Max nTPM: 84.3
Min nTPM: 79.8
Sample B Female 84.3
Sample C Male 82.3
Sample D Male 79.8
Substantia nigra
nTPM: 94.6
Samples: 4

Max nTPM: 117.6
Min nTPM: 74.6
Sample A Female 117.6
Sample B Female 74.6
Sample C Male 99.3
Sample D Male 86.8
Superior colliculi
nTPM: 104.2
Samples: 4

Max nTPM: 135.8
Min nTPM: 62.9
Sample A Female 103.8
Sample B Female 62.9
Sample C Male 135.8
Sample D Male 114.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.3
Samples: 4

Max nTPM: 177.3
Min nTPM: 158.6
Sample A Male 158.6
Sample B Male 171.1
Sample C Female 177.3
Sample D Female 170.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
73817983 Antisense, RP_051214_01_A08, Mouse strain C57BL/6J (56 days, male) 19.8
634466 Antisense, RP_040914_01_B05, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.