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CYP46A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.0 nTPM
HPA:32.0 nTPM
GTEx:25.1 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:40.4 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2586 Male, age 75, left hemisphere 38.3
1827 Male, age 72, unknown 30.3
2828 Female, age 72, unknown 28.7
2666 Male, age 74, left hemisphere 28.4
1833 Male, age 53, unknown 24.5
2411 Female, age 72, unknown 24.2
2219 Male, age 76, both hemispheres 24.1
2019 Male, age 18, unknown 23.4
1870 Female, age 42, unknown 23.1
1830 Male, age 51, unknown 22.5
Dorsal raphe nucleus
nTPM: 24.0
2298 Female, age 72, unknown 26.8
2750 Male, age 76, both hemispheres 24.5
1828 Male, age 53, unknown 24.3
2047 Male, age 72, unknown 23.7
2016 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 26.3
2097 Female, age 72, unknown 27.1
2849 Male, age 72, unknown 27.0
1890 Male, age 53, unknown 26.6
1848 Female, age 42, unknown 24.5
Median raphe nucleus
nTPM: 28.5
2220 Male, age 76, midline 28.5
Pedunculopontine tegmental nucleus
nTPM: 22.2
1921 Female, age 85, both hemispheres 26.0
2334 Male, age 80, both hemispheres 23.5
2338 Male, age 61, both hemispheres 17.0
Periaquaductal grey, anterior
nTPM: 30.5
1795 Male, age 51, unknown 33.6
2502 Female, age 75, unknown 30.5
1947 Male, age 18, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 26.6
1840 Male, age 53, unknown 31.0
1831 Male, age 72, unknown 26.1
2464 Female, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 23.3
Periaquaductal grey, lateral
nTPM: 24.4
2053 Male, age 18, unknown 27.6
2140 Male, age 76, both hemispheres 24.7
2272 Male, age 74, both hemispheres 20.9
Pretectal area
nTPM: 32.0
1816 Male, age 51, unknown 52.4
1944 Female, age 72, unknown 41.9
2007 Male, age 72, unknown 35.3
1815 Male, age 53, unknown 34.1
1817 Female, age 42, unknown 33.9
2667 Female, age 75, unknown 30.8
2825 Male, age 18, unknown 26.8
2224 Female, age 72, unknown 26.0
2407 Male, age 75, both hemispheres 26.0
2273 Male, age 74, both hemispheres 22.4
2316 Male, age 76, right hemisphere 22.2
Red nucleus
nTPM: 23.0
2584 Male, age 75, left hemisphere 27.3
2785 Male, age 18, unknown 26.5
2725 Female, age 75, unknown 26.1
2588 Male, age 74, left hemisphere 25.8
2503 Female, age 72, unknown 23.3
2227 Male, age 72, unknown 22.4
2769 Male, age 72, unknown 22.2
1954 Female, age 42, unknown 21.6
2823 Male, age 76, right hemisphere 21.1
1904 Male, age 53, unknown 20.8
1821 Female, age 72, unknown 20.5
1865 Male, age 51, unknown 18.8
Substantia nigra
nTPM: 23.9
1889 Female, age 72, unknown 30.9
2665 Male, age 74, both hemispheres 27.9
2583 Male, age 75, right hemisphere 26.9
1916 Female, age 42, unknown 24.6
2590 Female, age 75, unknown 24.3
1851 Male, age 51, unknown 22.5
2409 Female, age 72, unknown 21.5
2241 Male, age 72, unknown 21.2
2699 Male, age 18, unknown 20.6
1941 Male, age 53, unknown 19.2
Superior colliculus
nTPM: 30.2
2664 Male, age 75, both hemispheres 38.7
2087 Female, age 72, unknown 37.9
2261 Male, age 18, unknown 36.7
1796 Male, age 53, unknown 34.7
1839 Male, age 51, unknown 26.7
1995 Male, age 72, unknown 26.2
1913 Female, age 42, unknown 25.9
2587 Male, age 74, left hemisphere 25.9
2668 Female, age 75, unknown 24.6
1895 Male, age 76, right hemisphere 24.4
Ventral tegmental area
nTPM: 24.6
2223 Female, age 72, unknown 29.1
1915 Female, age 42, unknown 24.7
2410 Female, age 72, unknown 23.8
1942 Male, age 51, unknown 23.6
2021 Male, age 53, unknown 23.6
2218 Male, age 76, both hemispheres 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 50.6
Min nTPM: 6.8
Std nTPM: 7.8
Median nTPM: 25.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 50.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 41.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 40.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 38.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 36.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 36.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 35.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 35.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.8
FF:10158-103A5 76 years, female 12.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 77.5
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 26.1
Sample C Male 77.5
Sample D Male 60.3
Periaqueductal gray
nTPM: 29.6
Samples: 3

Max nTPM: 33.7
Min nTPM: 25.9
Sample B Female 29.3
Sample C Male 33.7
Sample D Male 25.9
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 31.3
Min nTPM: 19.0
Sample A Female 31.3
Sample B Female 19.2
Sample C Male 31.0
Sample D Male 19.0
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 60.8
Min nTPM: 23.5
Sample A Female 52.1
Sample B Female 23.5
Sample C Male 60.8
Sample D Male 48.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.4
Samples: 4

Max nTPM: 42.1
Min nTPM: 38.0
Sample A Male 42.1
Sample B Male 38.0
Sample C Female 41.3
Sample D Female 40.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
532667 Antisense, RP_040825_01_C02, Mouse strain C57BL/6J (56 days, male) 13.1
70613977 Antisense, RP_050725_01_C08, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.