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PSMA4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA:65.5 nTPM
GTEx:67.7 nTPM
FANTOM5:49.8 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:160.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.8
2019 Male, age 18, unknown 66.7
1827 Male, age 72, unknown 64.1
2411 Female, age 72, unknown 63.9
1833 Male, age 53, unknown 63.2
1870 Female, age 42, unknown 63.2
1830 Male, age 51, unknown 61.4
2219 Male, age 76, both hemispheres 61.4
2828 Female, age 72, unknown 60.8
2666 Male, age 74, left hemisphere 59.1
2586 Male, age 75, left hemisphere 54.6
Dorsal raphe nucleus
nTPM: 63.8
2298 Female, age 72, unknown 68.6
2750 Male, age 76, both hemispheres 64.9
1828 Male, age 53, unknown 62.6
2047 Male, age 72, unknown 62.6
2016 Female, age 72, unknown 60.3
Inferior colliculus
nTPM: 62.3
2097 Female, age 72, unknown 65.1
1848 Female, age 42, unknown 61.9
1890 Male, age 53, unknown 61.5
2849 Male, age 72, unknown 60.5
Median raphe nucleus
nTPM: 63.6
2220 Male, age 76, midline 63.6
Pedunculopontine tegmental nucleus
nTPM: 65.5
2338 Male, age 61, both hemispheres 66.1
2334 Male, age 80, both hemispheres 65.7
1921 Female, age 85, both hemispheres 64.6
Periaquaductal grey, anterior
nTPM: 62.7
1947 Male, age 18, unknown 63.5
2502 Female, age 75, unknown 63.0
1795 Male, age 51, unknown 61.5
Periaquaductal grey, dorsal
nTPM: 61.9
1840 Male, age 53, unknown 62.6
1831 Male, age 72, unknown 62.0
2464 Female, age 72, unknown 61.4
2850 Male, age 76, both hemispheres 61.4
Periaquaductal grey, lateral
nTPM: 61.4
2272 Male, age 74, both hemispheres 63.5
2140 Male, age 76, both hemispheres 61.0
2053 Male, age 18, unknown 59.8
Pretectal area
nTPM: 64.4
1817 Female, age 42, unknown 67.8
1944 Female, age 72, unknown 67.3
1816 Male, age 51, unknown 66.2
2007 Male, age 72, unknown 66.0
1815 Male, age 53, unknown 65.3
2273 Male, age 74, both hemispheres 65.1
2667 Female, age 75, unknown 64.4
2224 Female, age 72, unknown 63.0
2316 Male, age 76, right hemisphere 62.3
2825 Male, age 18, unknown 60.9
2407 Male, age 75, both hemispheres 59.9
Red nucleus
nTPM: 62.1
1821 Female, age 72, unknown 67.3
2823 Male, age 76, right hemisphere 64.3
2785 Male, age 18, unknown 63.7
1954 Female, age 42, unknown 63.2
2503 Female, age 72, unknown 62.5
2725 Female, age 75, unknown 62.4
1865 Male, age 51, unknown 62.0
1904 Male, age 53, unknown 61.6
2769 Male, age 72, unknown 60.5
2588 Male, age 74, left hemisphere 59.7
2227 Male, age 72, unknown 59.2
2584 Male, age 75, left hemisphere 58.8
Substantia nigra
nTPM: 64.3
2241 Male, age 72, unknown 70.5
1889 Female, age 72, unknown 67.5
1916 Female, age 42, unknown 66.0
2409 Female, age 72, unknown 65.5
1941 Male, age 53, unknown 64.9
1851 Male, age 51, unknown 64.8
2590 Female, age 75, unknown 62.2
2699 Male, age 18, unknown 60.8
2665 Male, age 74, both hemispheres 60.7
2583 Male, age 75, right hemisphere 60.3
Superior colliculus
nTPM: 62.1
1895 Male, age 76, right hemisphere 65.2
2087 Female, age 72, unknown 64.5
2587 Male, age 74, left hemisphere 63.9
2261 Male, age 18, unknown 62.8
2668 Female, age 75, unknown 62.6
1796 Male, age 53, unknown 61.8
1913 Female, age 42, unknown 61.8
1839 Male, age 51, unknown 61.5
1995 Male, age 72, unknown 60.3
2664 Male, age 75, both hemispheres 57.0
Ventral tegmental area
nTPM: 63.6
2218 Male, age 76, both hemispheres 65.3
1915 Female, age 42, unknown 64.7
2410 Female, age 72, unknown 64.6
2223 Female, age 72, unknown 62.9
1942 Male, age 51, unknown 62.7
2021 Male, age 53, unknown 61.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.7
Samples: 139

Max nTPM: 120.1
Min nTPM: 41.7
Std nTPM: 13.5
Median nTPM: 65.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 120.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 111.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 101.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 94.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 90.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 88.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 88.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 87.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 87.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.8
FF:10158-103A5 76 years, female 49.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.5
Sample A Female 15.2
Sample B Female 14.5
Sample C Male 19.2
Sample D Male 16.3
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 15.8
Min nTPM: 13.4
Sample B Female 13.4
Sample C Male 15.8
Sample D Male 13.8
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 11.4
Sample A Female 18.4
Sample B Female 13.5
Sample C Male 18.3
Sample D Male 11.4
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.5
Sample A Female 18.3
Sample B Female 13.5
Sample C Male 20.0
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 168.0
Min nTPM: 151.5
Sample A Male 168.0
Sample B Male 161.6
Sample C Female 151.5
Sample D Female 162.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.