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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.7 nTPM
HPA:102.7 nTPM
GTEx:72.4 nTPM
FANTOM5:184.8 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:46.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 102.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 77.7
2288 Male, age 75, left hemisphere 82.6
2481 Female, age 94, left hemisphere 81.1
2846 Female, age 79, unknown 78.9
1854 Male, age 80, left hemisphere 78.0
2290 Female, age 72, unknown 77.2
2289 Male, age 61, right hemisphere 75.3
1857 Female, age 85, left hemisphere 74.7
1781 Male, age 74, unknown 73.8
Claustrum
nTPM: 77.5
2292 Female, age 85, both hemispheres 87.3
1956 Male, age 74, unknown 84.1
2392 Female, age 94, both hemispheres 82.4
2196 Female, age 79, unknown 79.2
2491 Male, age 75, both hemispheres 76.0
2198 Male, age 80, both hemispheres 74.1
2568 Male, age 61, both hemispheres 73.0
2284 Female, age 91, both hemispheres 71.8
2645 Female, age 72, unknown 69.3
Globus pallidus, externus
nTPM: 99.0
1996 Male, age 80, right hemisphere 113.5
2772 Female, age 79, unknown 102.7
2646 Male, age 61, right hemisphere 95.3
2395 Male, age 75, both hemispheres 94.0
2567 Female, age 72, unknown 89.3
Globus pallidus, internus
nTPM: 102.7
2778 Female, age 91, both hemispheres 115.1
2111 Female, age 85, right hemisphere 112.2
1818 Male, age 74, unknown 104.0
2287 Male, age 75, right hemisphere 103.0
2037 Male, age 80, right hemisphere 100.8
2566 Female, age 72, unknown 92.1
2483 Female, age 94, right hemisphere 91.9
Nucleus accumbens
nTPM: 78.5
2391 Female, age 94, left hemisphere 87.9
2698 Female, age 72, unknown 85.8
2286 Male, age 75, left hemisphere 81.9
2732 Male, age 80, right hemisphere 80.7
1806 Female, age 85, left hemisphere 76.2
2824 Male, age 61, right hemisphere 75.3
1783 Male, age 74, unknown 72.4
1856 Female, age 91, right hemisphere 67.6
Nucleus basalis of Meynert
nTPM: 83.8
2569 Male, age 61, both hemispheres 97.0
2484 Female, age 94, left hemisphere 81.9
2393 Male, age 80, right hemisphere 78.8
2821 Male, age 75, both hemispheres 77.5
Nucleus of the diagonal band
nTPM: 68.3
1812 Female, age 91, both hemispheres 73.4
1979 Male, age 74, unknown 69.8
2029 Male, age 61, right hemisphere 67.9
2775 Male, age 80, right hemisphere 65.7
2195 Female, age 85, both hemispheres 64.9
Olfactory tubercle
nTPM: 69.7
2856 Male, age 75, right hemisphere 71.8
1846 Male, age 80, right hemisphere 71.5
2487 Female, age 94, left hemisphere 69.2
1998 Female, age 91, both hemispheres 66.3
Putamen
nTPM: 77.6
2482 Female, age 94, left hemisphere 83.5
1829 Male, age 74, unknown 80.8
2489 Female, age 72, unknown 78.6
2647 Male, age 75, left hemisphere 78.2
1937 Female, age 91, right hemisphere 76.3
2466 Female, age 79, unknown 74.4
1838 Male, age 80, right hemisphere 71.2
Septal nuclei
nTPM: 71.7
2394 Male, age 61, left hemisphere 84.1
2199 Male, age 80, right hemisphere 77.1
2629 Female, age 94, right hemisphere 70.6
2059 Female, age 85, both hemispheres 69.4
2009 Female, age 91, both hemispheres 69.0
2031 Female, age 72, unknown 68.1
1960 Male, age 74, unknown 63.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.8
Samples: 246

Max nTPM: 116.5
Min nTPM: 24.0
Std nTPM: 16.8
Median nTPM: 56.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 116.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 113.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 113.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 101.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 99.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 97.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 94.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 93.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 92.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 89.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.9
Samples: 246

Max nTPM: 190.1
Min nTPM: 23.3
Std nTPM: 20.5
Median nTPM: 43.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 190.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 134.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 123.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 122.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 106.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 103.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 95.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 94.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 87.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 85.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 85.9
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Brain - Putamen (basal ganglia)
Average nTPM: 72.4
Samples: 205

Max nTPM: 163.1
Min nTPM: 36.7
Std nTPM: 21.9
Median nTPM: 68.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 163.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 152.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 138.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 127.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 124.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 124.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 117.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 114.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 114.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 114.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 112.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.0
FF:10164-103B2 76 years, female 84.0
Globus pallidus
Scaled Tags Per Million: 184.8
FF:10161-103A8 76 years, female 222.0
FF:10175-103C4 60 years, female 147.6
Nucleus accumbens
Scaled Tags Per Million: 143.5
FF:10037-101F1 23-56 years, mixed 143.5
Putamen
Scaled Tags Per Million: 78.4
FF:10176-103C5 60 years, female 78.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Caudate
nTPM: 17.5
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.7
Sample A Female 19.0
Sample B Female 17.9
Sample C Male 17.3
Sample D Male 15.7
Putamen
nTPM: 30.2
Samples: 4

Max nTPM: 45.6
Min nTPM: 19.5
Sample A Female 45.6
Sample B Female 19.5
Sample C Male 26.1
Sample D Male 29.5
Septum
nTPM: 23.4
Samples: 4

Max nTPM: 27.1
Min nTPM: 20.5
Sample A Female 27.1
Sample B Female 20.5
Sample C Male 23.1
Sample D Male 22.7
Ventral pallidum
nTPM: 25.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 26.9
Sample C Male 27.3
Sample D Male 26.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.6
Samples: 4

Max nTPM: 52.1
Min nTPM: 40.4
Sample A Male 40.4
Sample B Male 42.6
Sample C Female 52.1
Sample D Female 51.1
Septum
nTPM: 44.5
Samples: 4

Max nTPM: 54.0
Min nTPM: 34.4
Sample A Male 34.4
Sample B Male 44.4
Sample C Female 45.2
Sample D Female 54.0
Ventral forebrain
nTPM: 35.4
Samples: 4

Max nTPM: 40.2
Min nTPM: 31.0
Sample A Male 33.7
Sample B Male 31.0
Sample C Female 40.2
Sample D Female 36.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.1
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.