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VAMP3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.7 nTPM
HPA:78.7 nTPM
GTEx:77.7 nTPM
FANTOM5:98.2 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:40.2 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 78.7
Sample id Sample description nTPM
Hippocampus
nTPM: 75.2
1911 Female, age 85, right hemisphere 78.0
2529 Female, age 94, left hemisphere 78.0
1855 Male, age 76, left hemisphere 75.7
1898 Male, age 80, left hemisphere 74.8
2621 Female, age 67, right hemisphere 74.1
2148 Female, age 91, left hemisphere 70.8
Dentate gyrus
nTPM: 73.7
2530 Female, age 94, left hemisphere 80.8
2010 Male, age 76, both hemispheres 78.2
2528 Male, age 74, both hemispheres 75.3
2246 Female, age 85, both hemispheres 72.4
2531 Female, age 67, both hemispheres 68.3
1927 Female, age 91, both hemispheres 66.9
Entorhinal gyrus
nTPM: 73.1
2117 Female, age 91, right hemisphere 82.9
2686 Male, age 75, right hemisphere 73.1
1787 Male, age 76, left hemisphere 72.5
2764 Male, age 80, right hemisphere 71.3
1938 Female, age 85, left hemisphere 70.8
2613 Female, age 94, left hemisphere 68.0
Hippocampus, CA1
nTPM: 71.8
2527 Male, age 74, both hemispheres 75.9
2045 Male, age 76, both hemispheres 72.3
2082 Female, age 91, right hemisphere 72.3
1873 Female, age 85, both hemispheres 71.6
2749 Male, age 80, left hemisphere 66.9
Hippocampus, CA2
nTPM: 74.1
2249 Male, age 74, both hemispheres 79.6
1963 Male, age 80, left hemisphere 75.3
2437 Female, age 94, left hemisphere 74.8
2113 Female, age 91, right hemisphere 73.4
1940 Female, age 85, left hemisphere 72.7
1892 Male, age 76, both hemispheres 68.8
Hippocampus, CA3
nTPM: 71.7
1891 Female, age 85, both hemispheres 79.8
1867 Male, age 76, both hemispheres 75.8
2436 Male, age 74, both hemispheres 73.0
2137 Male, age 80, left hemisphere 67.9
2620 Female, age 94, left hemisphere 67.7
2861 Female, age 67, both hemispheres 65.8
Parahippocampal cortex
nTPM: 71.8
2018 Male, age 76, both hemispheres 77.1
2532 Female, age 72, left hemisphere 75.4
2692 Male, age 74, both hemispheres 73.5
1990 Female, age 91, right hemisphere 73.2
1850 Male, age 80, both hemispheres 72.1
2245 Female, age 91, both hemispheres 70.9
1933 Female, age 85, both hemispheres 70.2
2250 Female, age 67, right hemisphere 69.6
2693 Female, age 94, both hemispheres 68.4
2622 Female, age 67, right hemisphere 67.2
Perirhinal gyrus
nTPM: 69.2
2848 Male, age 76, right hemisphere 70.5
2521 Female, age 94, right hemisphere 70.2
1841 Female, age 85, right hemisphere 69.6
1794 Male, age 80, right hemisphere 69.3
1847 Female, age 91, left hemisphere 66.4
Subiculum
nTPM: 78.7
2042 Male, age 76, both hemispheres 88.2
1901 Male, age 80, both hemispheres 79.2
1977 Female, age 85, both hemispheres 77.5
2438 Female, age 94, left hemisphere 76.8
2729 Female, age 91, right hemisphere 76.4
2619 Male, age 74, both hemispheres 73.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.7
Samples: 197

Max nTPM: 219.4
Min nTPM: 32.6
Std nTPM: 30.4
Median nTPM: 71.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 219.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 189.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 163.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 158.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 154.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 148.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 142.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 135.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 131.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 129.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 128.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 98.2
FF:10153-102I9 76 years, female 126.3
FF:10169-103B7 60 years, female 70.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 15.0
Sample A Female 32.5
Sample B Female 20.5
Sample C Male 26.2
Sample D Male 15.0
Entorhinal cortex
nTPM: 16.8
Samples: 4

Max nTPM: 20.8
Min nTPM: 12.6
Sample A Female 16.3
Sample B Female 20.8
Sample C Male 17.6
Sample D Male 12.6
Subiculum
nTPM: 18.0
Samples: 4

Max nTPM: 20.3
Min nTPM: 16.1
Sample A Female 20.3
Sample B Female 19.2
Sample C Male 16.4
Sample D Male 16.1
Ventral hippocampus
nTPM: 20.8
Samples: 4

Max nTPM: 22.4
Min nTPM: 17.0
Sample A Female 22.4
Sample B Female 17.0
Sample C Male 21.4
Sample D Male 22.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 30.3
Sample A Male 34.6
Sample B Male 32.0
Sample C Female 33.7
Sample D Female 30.3
Hippocampal formation
nTPM: 40.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.8
Sample A Male 40.2
Sample B Male 35.8
Sample C Female 45.8
Sample D Female 39.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.3
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0

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