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GPC1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:41.7 nTPM
HPA:41.7 nTPM
GTEx:57.2 nTPM
FANTOM5:115.8 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:51.3 nTPM
Allen mouse:5.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030571Antibody HPA070449
Glial cells LowNot detected
Neuronal cells Not detectedLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Hippocampus
nTPM: 36.5
2621 Female, age 67, right hemisphere 43.0
2148 Female, age 91, left hemisphere 41.7
1911 Female, age 85, right hemisphere 38.6
2529 Female, age 94, left hemisphere 33.3
1898 Male, age 80, left hemisphere 31.2
1855 Male, age 76, left hemisphere 30.9
Dentate gyrus
nTPM: 38.2
2531 Female, age 67, both hemispheres 49.4
1927 Female, age 91, both hemispheres 43.1
2528 Male, age 74, both hemispheres 38.8
2530 Female, age 94, left hemisphere 38.5
2246 Female, age 85, both hemispheres 35.8
2010 Male, age 76, both hemispheres 23.4
Entorhinal gyrus
nTPM: 41.7
2686 Male, age 75, right hemisphere 52.8
2613 Female, age 94, left hemisphere 50.1
2764 Male, age 80, right hemisphere 44.1
1787 Male, age 76, left hemisphere 39.7
1938 Female, age 85, left hemisphere 33.8
2117 Female, age 91, right hemisphere 29.7
Hippocampus, CA1
nTPM: 34.5
2527 Male, age 74, both hemispheres 48.1
1873 Female, age 85, both hemispheres 37.4
2749 Male, age 80, left hemisphere 35.8
2082 Female, age 91, right hemisphere 30.3
2045 Male, age 76, both hemispheres 20.7
Hippocampus, CA2
nTPM: 33.2
1963 Male, age 80, left hemisphere 37.9
2249 Male, age 74, both hemispheres 37.1
2437 Female, age 94, left hemisphere 34.7
1892 Male, age 76, both hemispheres 31.3
2113 Female, age 91, right hemisphere 29.6
1940 Female, age 85, left hemisphere 28.5
Hippocampus, CA3
nTPM: 39.1
2861 Female, age 67, both hemispheres 61.4
2620 Female, age 94, left hemisphere 61.1
2137 Male, age 80, left hemisphere 31.1
2436 Male, age 74, both hemispheres 29.6
1891 Female, age 85, both hemispheres 26.0
1867 Male, age 76, both hemispheres 25.2
Parahippocampal cortex
nTPM: 40.8
2622 Female, age 67, right hemisphere 70.9
2692 Male, age 74, both hemispheres 51.9
2693 Female, age 94, both hemispheres 47.9
2250 Female, age 67, right hemisphere 41.3
2245 Female, age 91, both hemispheres 39.7
1933 Female, age 85, both hemispheres 36.8
2532 Female, age 72, left hemisphere 35.2
1990 Female, age 91, right hemisphere 34.8
1850 Male, age 80, both hemispheres 26.8
2018 Male, age 76, both hemispheres 22.5
Perirhinal gyrus
nTPM: 34.7
2521 Female, age 94, right hemisphere 40.2
1847 Female, age 91, left hemisphere 36.1
1794 Male, age 80, right hemisphere 34.7
1841 Female, age 85, right hemisphere 32.5
2848 Male, age 76, right hemisphere 30.0
Subiculum
nTPM: 29.4
2619 Male, age 74, both hemispheres 49.6
2729 Female, age 91, right hemisphere 34.8
1977 Female, age 85, both hemispheres 30.7
1901 Male, age 80, both hemispheres 21.6
2438 Female, age 94, left hemisphere 21.3
2042 Male, age 76, both hemispheres 18.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 57.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.2
Samples: 197

Max nTPM: 97.9
Min nTPM: 16.4
Std nTPM: 18.3
Median nTPM: 57.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 97.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 97.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 97.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 96.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 96.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 95.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 95.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 94.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 92.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 91.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 89.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 115.8
FF:10153-102I9 76 years, female 138.5
FF:10169-103B7 60 years, female 93.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 22.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 19.8
Sample A Female 24.5
Sample B Female 24.1
Sample C Male 22.7
Sample D Male 19.8
Entorhinal cortex
nTPM: 29.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 27.2
Sample A Female 27.2
Sample B Female 28.2
Sample C Male 34.0
Sample D Male 29.4
Subiculum
nTPM: 27.4
Samples: 4

Max nTPM: 32.7
Min nTPM: 22.8
Sample A Female 32.7
Sample B Female 24.7
Sample C Male 29.5
Sample D Male 22.8
Ventral hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 39.8
Min nTPM: 24.0
Sample A Female 25.2
Sample B Female 24.0
Sample C Male 39.8
Sample D Male 26.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 19.7
Sample A Male 21.1
Sample B Male 19.7
Sample C Female 23.8
Sample D Female 23.6
Hippocampal formation
nTPM: 51.3
Samples: 4

Max nTPM: 72.2
Min nTPM: 34.6
Sample A Male 34.6
Sample B Male 55.0
Sample C Female 72.2
Sample D Female 43.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.7
73994669 Antisense, RP_051214_03_E04, Mouse strain C57BL/6J (56 days, male) 5.7
69734536 Antisense, RP_050503_01_B04, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.