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GPC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA:30.4 nTPM
GTEx:32.2 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:17.6 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2586 Male, age 75, left hemisphere 32.4
2828 Female, age 72, unknown 28.4
1827 Male, age 72, unknown 27.8
2219 Male, age 76, both hemispheres 16.3
2019 Male, age 18, unknown 16.0
2666 Male, age 74, left hemisphere 15.0
2411 Female, age 72, unknown 11.2
1830 Male, age 51, unknown 7.0
1833 Male, age 53, unknown 6.2
1870 Female, age 42, unknown 5.1
Dorsal raphe nucleus
nTPM: 14.2
2047 Male, age 72, unknown 18.6
2298 Female, age 72, unknown 18.3
1828 Male, age 53, unknown 14.4
2750 Male, age 76, both hemispheres 14.3
2016 Female, age 72, unknown 5.6
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 19.8
1890 Male, age 53, unknown 13.5
1848 Female, age 42, unknown 11.3
2849 Male, age 72, unknown 8.9
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Pedunculopontine tegmental nucleus
nTPM: 10.2
1921 Female, age 85, both hemispheres 15.4
2334 Male, age 80, both hemispheres 11.4
2338 Male, age 61, both hemispheres 3.9
Periaquaductal grey, anterior
nTPM: 30.4
1795 Male, age 51, unknown 43.8
2502 Female, age 75, unknown 26.9
1947 Male, age 18, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 18.3
1831 Male, age 72, unknown 25.7
1840 Male, age 53, unknown 16.9
2464 Female, age 72, unknown 16.5
2850 Male, age 76, both hemispheres 14.1
Periaquaductal grey, lateral
nTPM: 21.7
2272 Male, age 74, both hemispheres 24.7
2053 Male, age 18, unknown 20.5
2140 Male, age 76, both hemispheres 19.8
Pretectal area
nTPM: 27.8
1816 Male, age 51, unknown 52.8
1944 Female, age 72, unknown 44.7
2007 Male, age 72, unknown 34.1
2667 Female, age 75, unknown 28.0
1815 Male, age 53, unknown 27.2
1817 Female, age 42, unknown 24.9
2273 Male, age 74, both hemispheres 24.2
2316 Male, age 76, right hemisphere 24.1
2224 Female, age 72, unknown 16.8
2825 Male, age 18, unknown 15.5
2407 Male, age 75, both hemispheres 13.7
Red nucleus
nTPM: 9.0
2785 Male, age 18, unknown 19.5
2584 Male, age 75, left hemisphere 17.7
2823 Male, age 76, right hemisphere 17.6
2725 Female, age 75, unknown 17.0
2588 Male, age 74, left hemisphere 9.6
1904 Male, age 53, unknown 6.9
2769 Male, age 72, unknown 5.4
2503 Female, age 72, unknown 4.6
2227 Male, age 72, unknown 4.5
1954 Female, age 42, unknown 3.0
1865 Male, age 51, unknown 2.1
1821 Female, age 72, unknown 0.0
Substantia nigra
nTPM: 11.9
1889 Female, age 72, unknown 20.9
2665 Male, age 74, both hemispheres 20.3
1941 Male, age 53, unknown 15.0
2590 Female, age 75, unknown 15.0
2583 Male, age 75, right hemisphere 14.2
1916 Female, age 42, unknown 13.8
1851 Male, age 51, unknown 10.5
2699 Male, age 18, unknown 5.7
2409 Female, age 72, unknown 3.3
2241 Male, age 72, unknown 0.2
Superior colliculus
nTPM: 23.8
2087 Female, age 72, unknown 40.8
2261 Male, age 18, unknown 40.0
2664 Male, age 75, both hemispheres 34.5
1796 Male, age 53, unknown 31.1
1995 Male, age 72, unknown 23.2
1913 Female, age 42, unknown 20.5
1895 Male, age 76, right hemisphere 15.1
2587 Male, age 74, left hemisphere 12.8
1839 Male, age 51, unknown 10.6
2668 Female, age 75, unknown 9.8
Ventral tegmental area
nTPM: 12.6
1942 Male, age 51, unknown 16.7
2218 Male, age 76, both hemispheres 16.6
2021 Male, age 53, unknown 13.8
1915 Female, age 42, unknown 11.3
2223 Female, age 72, unknown 10.8
2410 Female, age 72, unknown 6.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 68.4
Min nTPM: 11.9
Std nTPM: 10.0
Median nTPM: 32.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 68.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 61.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 55.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 55.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 53.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 48.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 48.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 47.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.0
Pig sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 64.6
Min nTPM: 14.8
Sample A Female 19.2
Sample B Female 14.8
Sample C Male 64.6
Sample D Male 20.2
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 15.7
Min nTPM: 11.6
Sample B Female 13.9
Sample C Male 15.7
Sample D Male 11.6
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 21.2
Min nTPM: 10.3
Sample A Female 21.2
Sample B Female 13.2
Sample C Male 20.8
Sample D Male 10.3
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 55.2
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 25.6
Sample C Male 55.2
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 18.3
Min nTPM: 17.1
Sample A Male 18.3
Sample B Male 17.1
Sample C Female 17.8
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
73994669 Antisense, RP_051214_03_E04, Mouse strain C57BL/6J (56 days, male) 4.0
69734536 Antisense, RP_050503_01_B04, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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